PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PH01001881G0390

Organism

Phyllostachys heterocycla

Taxonomic ID

38705

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys

Family

G2-like

Protein Properties

Length: 388aa MW: 41078.6 Da PI: 4.7169

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PH01001881G0390	genome	ICBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	46.6	7.5e-15	231	263	22	54
G2-like 22 GGsekAtPktilelmkvkgLtlehvkSHLQkYR 54 G +++AtPk+i+elmkv+gLt+++vkSHLQ Y PH01001881G0390 231 GSNNVATPKQIRELMKVDGLTNDEVKSHLQEYA 263 66789**************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	5.7E-11	230	264	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	8.7E-12	231	263	IPR006447	Myb domain, plants

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 388 aa Download sequence Send to blast
MDSSPSDLTL DYKPNGGGGT AAGAYPMIIP KQAPPIVDGH HLTTEQATQK LQEFLSRLEE 60 ERLKIDAFKR ELPLCMQLLN HAMEAYRQQL EAYQMESQGG AAAARPLVLE QFIPLKNIGI 120 DAADKPGNPP SEKASWMVSA QLWNGPAADT AAKGPQTPKE HSEHPLDTSP KLSALDGGSG 180 QRNGGAFLPF SKDKAMAESA ALPELALAPA EKDAIAGAGA EVDKKPYHDA GSNNVATPKQ 240 IRELMKVDGL TNDEVKSHLQ EYATQAGAPA IYGAHPATQP HYTAAVAAQE YYQSHAAVHH 300 LQHHPAAAMV HRAVAPPPPP AYKAAAMVGS PESEGRGSGD GRERSESIEE EGEGEEREEE 360 EDDDEMAALA AKADAEENAA GAGVIKY*

Sequence ? help Back to Top

Protein Sequence Length: 388 aa Download sequence Send to blast

MDSSPSDLTL DYKPNGGGGT AAGAYPMIIP KQAPPIVDGH HLTTEQATQK LQEFLSRLEE  60
ERLKIDAFKR ELPLCMQLLN HAMEAYRQQL EAYQMESQGG AAAARPLVLE QFIPLKNIGI  120
DAADKPGNPP SEKASWMVSA QLWNGPAADT AAKGPQTPKE HSEHPLDTSP KLSALDGGSG  180
QRNGGAFLPF SKDKAMAESA ALPELALAPA EKDAIAGAGA EVDKKPYHDA GSNNVATPKQ  240
IRELMKVDGL TNDEVKSHLQ EYATQAGAPA IYGAHPATQP HYTAAVAAQE YYQSHAAVHH  300
LQHHPAAAMV HRAVAPPPPP AYKAAAMVGS PESEGRGSGD GRERSESIEE EGEGEEREEE  360
EDDDEMAALA AKADAEENAA GAGVIKY*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that may play a role in regulatory networks controlling development and metabolism. {ECO:0000250\|UniProtKB:Q6Z869}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PH01001881G0390

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT084278	1e-101	BT084278.2 Zea mays full-length cDNA clone ZM_BFb0097M01 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020184511.1	1e-120	myb family transcription factor EFM
Swissprot	Q5VRW2	2e-88	NOH1_ORYSJ; Transcription factor NIGTH1
TrEMBL	A0A3L6SLE0	1e-130	A0A3L6SLE0_PANMI; Putative transcription factor GLK2
STRING	Sb03g004090.1	1e-112	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP9773	33	38

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G03500.1	1e-37	G2-like family protein

Publications ? help Back to Top
Kamrul Huda KM, et al. Salinity and drought tolerant OsACA6 enhances cold tolerance in transgenic tobacco by interacting with stress-inducible proteins. Plant Physiol. Biochem., 2014. 82: p. 229-38 [PMID:24992889]