PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PH01001871G0100 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
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Family | bZIP | ||||||||
Protein Properties | Length: 258aa MW: 28975.1 Da PI: 9.744 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 22.1 | 3.4e-07 | 125 | 150 | 17 | 42 |
HHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 17 ArrsRqRKkaeieeLeekvkeLeaeN 42 A+rsR RK+++i+eLe++v++L++e PH01001871G0100 125 AQRSRVRKLQYIAELERRVQALQTEG 150 89********************9985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 1.5E-5 | 114 | 173 | IPR004827 | Basic-leucine zipper domain |
CDD | cd14703 | 2.51E-15 | 115 | 165 | No hit | No description |
SuperFamily | SSF57959 | 3.6E-6 | 124 | 167 | No hit | No description |
Gene3D | G3DSA:1.20.5.170 | 2.9E-7 | 125 | 167 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 258 aa Download sequence Send to blast |
MYDNVFDGMR GGQIASLGGA PEYFLEPSSF ARPQGQGRPW ESRQMFQQGG GMPMPVREKN 60 GGHHHGPSSQ FGDHGHGAVP NGVDRKGHGD AAHDQRVGAE RKDGGAQLRH SQSEADTKRA 120 KQQYAQRSRV RKLQYIAELE RRVQALQTEG IEVSAEMDFL GQQNIMLDLE NKALKQRLES 180 LSQEQLIKRF QQEMFEREIG RLRSLFQQQQ QQQHIPQQQA PAHNRSSSRD LDSQFANMSL 240 KHNDSNSGRD AVPGLRI* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PH01001871G0100 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FP094010 | 0.0 | FP094010.1 Phyllostachys edulis cDNA clone: bphylf037c09, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015698470.1 | 1e-137 | PREDICTED: basic leucine zipper 6-like | ||||
TrEMBL | A0A3L6T2U0 | 1e-139 | A0A3L6T2U0_PANMI; Uncharacterized protein | ||||
STRING | Pavir.Ca00279.1.p | 1e-137 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3310 | 36 | 66 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G58110.2 | 1e-48 | bZIP family protein |