PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PH01001870G0190 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
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Family | bZIP | ||||||||
Protein Properties | Length: 241aa MW: 26369.8 Da PI: 10.5336 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 35.8 | 1.7e-11 | 42 | 100 | 5 | 63 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 kr++r NR +A rs +RK +i+eLe+kv++L++e ++L +l++l+ l+se+ PH01001870G0190 42 KRAKRILANRQSAARSKERKMRYIAELERKVQTLQTEATTLSAQLSMLQRDTTGLTSEN 100 9************************************************9999998887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 5.9E-18 | 38 | 102 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 11.139 | 40 | 103 | IPR004827 | Basic-leucine zipper domain |
Gene3D | G3DSA:1.20.5.170 | 9.6E-12 | 42 | 97 | No hit | No description |
Pfam | PF00170 | 6.8E-10 | 42 | 100 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 1.45E-11 | 42 | 97 | No hit | No description |
CDD | cd14703 | 1.16E-20 | 43 | 92 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 241 aa Download sequence Send to blast |
MSMDGSTSLA SAATGVAGRA AADAKKAISD AKLAELALVD PKRAKRILAN RQSAARSKER 60 KMRYIAELER KVQTLQTEAT TLSAQLSMLQ RDTTGLTSEN SDLKLRVQTM EQQVRLQDAL 120 NDRLRDEIQK LKIATGQVNA NSGKMGNFGP SSYGVNSRSY QRSHIQSLLA AQQLQQLQIH 180 SQHQQQQMHL QQQYLSSAQQ QQLLQEALPL PVDLKMKGIA TTSHAQNAGV SDSHALRSEP 240 * |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor with an activatory role. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PH01001870G0190 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK366888 | 1e-149 | AK366888.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2047M20. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015633411.1 | 1e-122 | transcription factor RF2a-like | ||||
Swissprot | Q04088 | 6e-66 | POF21_ARATH; Probable transcription factor PosF21 | ||||
TrEMBL | A0A0D3FXG2 | 1e-123 | A0A0D3FXG2_9ORYZ; Uncharacterized protein | ||||
STRING | OBART04G17300.1 | 1e-124 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12302 | 29 | 37 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G06070.1 | 3e-57 | bZIP family protein |
Publications ? help Back to Top | |||
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