PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PH01001864G0070 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
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Family | ERF | ||||||||
Protein Properties | Length: 189aa MW: 19728.2 Da PI: 8.0215 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 61.7 | 1.7e-19 | 48 | 96 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+G+r+++ +grW+AeIrdp++ +r++lg++ taeeAa+a++ a++ ++g PH01001864G0070 48 YRGIRRRP-WGRWAAEIRDPRK---GARVWLGTYATAEEAARAYDVAARDIRG 96 9*******.**********954...4***********************9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 1.5E-31 | 47 | 104 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 24.895 | 47 | 104 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 8.9E-14 | 47 | 96 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.57E-22 | 47 | 105 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 1.8E-33 | 47 | 110 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 5.99E-29 | 48 | 106 | No hit | No description |
PRINTS | PR00367 | 2.8E-11 | 48 | 59 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.8E-11 | 70 | 86 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 189 aa Download sequence Send to blast |
MCGGAIIADF LQAGGRCPAT SSPDISANSL TGVEVTEKLP APGRKTAYRG IRRRPWGRWA 60 AEIRDPRKGA RVWLGTYATA EEAARAYDVA ARDIRGAKAK LNFPPAVRAP PAVATGAKKR 120 RRVAAEESSG SYSPSPQAAV AAGGGGVERL RECMSGLEAF LGPDDVAVGD ASEGDDVDPW 180 DAVDLMFE* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 3e-21 | 48 | 113 | 15 | 81 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 118 | 122 | KRRRV |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:9159183}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PH01001864G0070 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By 1-aminocyclopropane-1-carboxylic acid (ACC, ethylene precursor), methyl jasmonate (MeJA), and Botrytis cinerea. Also induced by cadmium. {ECO:0000269|PubMed:18836139, ECO:0000269|PubMed:9159183}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC134348 | 7e-83 | AC134348.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone P0530H10, complete sequence. | |||
GenBank | AC135929 | 7e-83 | AC135929.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone P0692D12, complete sequence. | |||
GenBank | AK100184 | 7e-83 | AK100184.1 Oryza sativa Japonica Group cDNA clone:J023031H12, full insert sequence. | |||
GenBank | AK111676 | 7e-83 | AK111676.1 Oryza sativa Japonica Group cDNA clone:J013155B14, full insert sequence. | |||
GenBank | AP014961 | 7e-83 | AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012613 | 7e-83 | CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020148477.1 | 1e-74 | ethylene-responsive transcription factor RAP2-3-like | ||||
Swissprot | P42736 | 5e-33 | RAP23_ARATH; Ethylene-responsive transcription factor RAP2-3 | ||||
TrEMBL | F8SLT7 | 1e-81 | F8SLT7_HORVV; AP2/EREBP-like protein | ||||
STRING | MLOC_64636.1 | 2e-82 | (Hordeum vulgare) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP103 | 37 | 465 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47520.1 | 7e-23 | ERF family protein |