PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01001843G0210
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family NAC
Protein Properties Length: 396aa    MW: 43084.1 Da    PI: 6.1475
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01001843G0210genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM136.61.6e-421652841123
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 
                      lppGfrFhPtdeelv +yL+++++g+  ++  +i+e+d+y+++Pw+Lp+++  + +ewyfF++rd+ky++g+r+nra+ +gyWkatg dk+v +
  PH01001843G0210 165 LPPGFRFHPTDEELVAHYLCARAAGRAPPV-PIIAELDLYRFDPWELPERALFGAREWYFFTPRDRKYPNGSRPNRAAGTGYWKATGADKPVAH 257
                      79*************************999.88***************8777899*************************************** PP

              NAM  95 kkgelvglkktLvfykgrapkgektdWvm 123
                       +g++ g+kk+Lvfy+g+ p+g   dWv+
  PH01001843G0210 258 -EGRTAGIKKSLVFYHGKPPRG-LDDWVL 284
                      .999*****************8.789997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.92E-50161290IPR003441NAC domain
PROSITE profilePS5100544.623165309IPR003441NAC domain
PfamPF023651.5E-20166284IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 396 aa     Download sequence    Send to blast
MGAVDHVLEL GNHVVVALSG CGDDTEVVVV AVRVGDRGSS GGGDVVRSFS ESVGSRAGGV  60
MRQMRPKGSA TRTQGNTPLA YGSESAGETH NEEGRGAGGG DQGRGSRAVS CLDPVVPCTL  120
THGHSHSRTG TNDPKNRIAR RRLEGMVMAA AAQSGRRDAE AELNLPPGFR FHPTDEELVA  180
HYLCARAAGR APPVPIIAEL DLYRFDPWEL PERALFGARE WYFFTPRDRK YPNGSRPNRA  240
AGTGYWKATG ADKPVAHEGR TAGIKKSLVF YHGKPPRGLD DWVLCRLYNK KNEWEKMQQE  300
KSQSSGETRT PELEIDNEPL PELDSLPAFQ HMGLPQVVPK EEVQELDNDW LMGINLDDLP  360
GDDFYASMLV SPTAAKTVQD GSPFFLALSP EETRR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A3e-811572967174Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in stress response. {ECO:0000250|UniProtKB:Q7F2L3}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01001843G0210
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt and cold stresses (PubMed:18813954, PubMed:20632034). Induced by dehydration and methyl jasmonate (PubMed:20632034). {ECO:0000269|PubMed:18813954, ECO:0000269|PubMed:20632034}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKR8148231e-134KR814823.1 Triticum aestivum NAC transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001141629.21e-123uncharacterized protein LOC100273749
SwissprotQ7EZT11e-110NAC67_ORYSJ; NAC domain-containing protein 67
TrEMBLA0A0A9P3S71e-123A0A0A9P3S7_ARUDO; Uncharacterized protein
STRINGGRMZM2G079632_P011e-122(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44143071
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63790.11e-65NAC domain containing protein 102
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Takasaki H, et al.
    The abiotic stress-responsive NAC-type transcription factor OsNAC5 regulates stress-inducible genes and stress tolerance in rice.
    Mol. Genet. Genomics, 2010. 284(3): p. 173-83
    [PMID:20632034]
  3. Ghosh T,Rai M,Tyagi W,Challam C
    Seedling stage low temperature response in tolerant and susceptible rice genotypes suggests role of relative water content and members of OsSNAC gene family.
    Plant Signal Behav, 2016. 11(5): p. e1138192
    [PMID:26829663]
  4. Rahman H,Ramanathan V,Nallathambi J,Duraialagaraja S,Muthurajan R
    Over-expression of a NAC 67 transcription factor from finger millet (Eleusine coracana L.) confers tolerance against salinity and drought stress in rice.
    BMC Biotechnol., 2016. 16 Suppl 1: p. 35
    [PMID:27213684]