PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PH01001797G0410

Organism

Phyllostachys heterocycla

Taxonomic ID

38705

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys

Family

NAC

Protein Properties

Length: 578aa MW: 64095.4 Da PI: 4.9866

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PH01001797G0410	genome	ICBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	162	2.2e-50	81	208	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 lppGf FhP+d el+++yLkkk+ g+k+e+ +vi+evdiyk+ePwdLp+ ++ +++++w+fF++rd+ky++g+r+nrat +gyWk+tgkd+++ PH01001797G0410 81 LPPGFGFHPKDTELISHYLKKKIFGQKIEF-DVIPEVDIYKHEPWDLPAkcNLPTQDNKWHFFASRDRKYPNGSRSNRATIAGYWKSTGKDRTI 173 79*************************9.9************5245666999********************************** PP NAM 93 lskkgelvglkktLvfykgrapkgektdWvmheyrl 128 + +++++g+kktLvf++gr p+g++t+W+mhey + PH01001797G0410 174 KM-SNRTIGTKKTLVFHEGRPPSGRRTEWIMHEYYI 208 9.8999**************************75 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.48E-58	75	231	IPR003441	NAC domain
PROSITE profile	PS51005	55.732	81	231	IPR003441	NAC domain
Pfam	PF02365	8.7E-24	82	207	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 578 aa Download sequence Send to blast
MAAIGEEEDT GAWFDLETGS DTGMAGDNEM WRCRRWGRST RSIRGRWWRG AGTPNSTTMW 60 PGTAGSGLRF CKMENLRDLT LPPGFGFHPK DTELISHYLK KKIFGQKIEF DVIPEVDIYK 120 HEPWDLPAKC NLPTQDNKWH FFASRDRKYP NGSRSNRATI AGYWKSTGKD RTIKMSNRTI 180 GTKKTLVFHE GRPPSGRRTE WIMHEYYIDE NECQASPDMK DAFVLCRVTK RDGWTSEKDT 240 EVDNSDPHPQ QPNDAATSVI SAEQPDAAVA LVIGAAQPNH VVTSVTSAEL PNDVAISAMT 300 ADTATPYGDE ELQAWLEELF DFSFNPVQDP VSADMSLAGQ SAESSNLQNL DAVAPKVELG 360 YASPNQNWGD DTDYLLTEDI YNILHPCTDD FDYGVLQDPA DQAALAFANQ TYMMGMDSYI 420 LPNNIVDGAQ KEELQLPQEK NEPNLSNESV DTGIILRRRR GTTPATSMSP SSGRVRLQVG 480 INKMVTSNSE PINQTMKFVD NSGRLDLMTN VEHQKKHTHD AASVKQSDAG KPSKDHNNQG 540 FFRGVRKAFR GCSAAGLNIL VAVCTDIDPL LSAPVFV*

Sequence ? help Back to Top

Protein Sequence Length: 578 aa Download sequence Send to blast

MAAIGEEEDT GAWFDLETGS DTGMAGDNEM WRCRRWGRST RSIRGRWWRG AGTPNSTTMW  60
PGTAGSGLRF CKMENLRDLT LPPGFGFHPK DTELISHYLK KKIFGQKIEF DVIPEVDIYK  120
HEPWDLPAKC NLPTQDNKWH FFASRDRKYP NGSRSNRATI AGYWKSTGKD RTIKMSNRTI  180
GTKKTLVFHE GRPPSGRRTE WIMHEYYIDE NECQASPDMK DAFVLCRVTK RDGWTSEKDT  240
EVDNSDPHPQ QPNDAATSVI SAEQPDAAVA LVIGAAQPNH VVTSVTSAEL PNDVAISAMT  300
ADTATPYGDE ELQAWLEELF DFSFNPVQDP VSADMSLAGQ SAESSNLQNL DAVAPKVELG  360
YASPNQNWGD DTDYLLTEDI YNILHPCTDD FDYGVLQDPA DQAALAFANQ TYMMGMDSYI  420
LPNNIVDGAQ KEELQLPQEK NEPNLSNESV DTGIILRRRR GTTPATSMSP SSGRVRLQVG  480
INKMVTSNSE PINQTMKFVD NSGRLDLMTN VEHQKKHTHD AASVKQSDAG KPSKDHNNQG  540
FFRGVRKAFR GCSAAGLNIL VAVCTDIDPL LSAPVFV*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	5e-45	78	234	12	172	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in stress response. {ECO:0000250\|UniProtKB:Q7F2L3}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PH01001797G0410

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by salt and cold stresses. {ECO:0000269\|PubMed:18813954}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KF484751	0.0	KF484751.1 Dendrocalamus latiflorus NAC domain-containing protein (NAC) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003566632.1	0.0	NAC domain-containing protein 74
Swissprot	Q7GCL7	0.0	NAC74_ORYSJ; NAC domain-containing protein 74
TrEMBL	A0A2P0N9K6	0.0	A0A2P0N9K6_BAMEM; NAC4 transcription factor
STRING	BRADI2G09530.1	0.0	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7560	38	47

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G17730.1	8e-68	NAC domain containing protein 57

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]