PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01001779G0420
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family G2-like
Protein Properties Length: 390aa    MW: 42683.7 Da    PI: 6.6546
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01001779G0420genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like95.34.8e-30118172155
          G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                      +prlrWt +LHerFv av++LGG++ AtPk++l++m+v+gLtl+h+kSHLQkYRl
  PH01001779G0420 118 RPRLRWTRQLHERFVLAVSELGGADGATPKSVLRAMGVPGLTLYHLKSHLQKYRL 172
                      59****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512949.515115175IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.7E-30116176IPR009057Homeodomain-like
SuperFamilySSF466891.97E-15117175IPR009057Homeodomain-like
TIGRFAMsTIGR015571.8E-21119172IPR006447Myb domain, plants
PfamPF002494.8E-7120171IPR001005SANT/Myb domain
PfamPF143793.9E-15236275IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 390 aa     Download sequence    Send to blast
MGVEASQTQK MAGPQQPHAL YSLAHSCCLA LYPSPLYPYM LLHKRKGKTK REGERERGGG  60
IYLSSGVQGK EPTEPPPLRV AAASHAVHAT DPAAIPRTVV GSLEMSSSDH PHQHGEARPR  120
LRWTRQLHER FVLAVSELGG ADGATPKSVL RAMGVPGLTL YHLKSHLQKY RLAMSRDLTA  180
SLAGNGGLND RSSPLESPPN EYDDDSTTEL HTFVCADDGD DDTKEALCDS SRSMAQMQRE  240
VQRKLQEQIE VQRHLQLRIE AQGRYLQSVL RRAQQVLADH SPASSPEAAK AELSELVSAV  300
ETECLSSSPS PPRRRHRSTD SCVTSSSSEA ESMAAGSKRL YTSMHCRDCT VEQLVQGKMS  360
FPFLQRHEAE QEEAAEAEDG SSAEIDLNR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A6e-18117176160Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B6e-18117176160Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A6e-18117176160Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C6e-18117176160Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D6e-18117176160Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F6e-18117176160Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H6e-18117176160Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J6e-18117176160Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14451RKGKTKRE
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01001779G0420
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0952070.0FP095207.1 Phyllostachys edulis cDNA clone: bphyem201h10, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015650853.11e-114myb-related protein 2
TrEMBLQ0J5H11e-117Q0J5H1_ORYSJ; Os08g0434700 protein (Fragment)
STRINGOS08T0434700-011e-118(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP112643038
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79430.23e-45G2-like family protein