PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01001777G0350
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family ARR-B
Protein Properties Length: 686aa    MW: 74177.3 Da    PI: 6.5146
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01001777G0350genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like85.36.1e-27194247155
          G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                      kpr+ Wt++LH++Fve+v+q+ G+ekA+Pk+il++m+v+ +t+e+v+SHLQkYRl
  PH01001777G0350 194 KPRVTWTSQLHRKFVEVVNQI-GIEKAVPKKILDMMNVDYITRENVASHLQKYRL 247
                      79*******************.********************************8 PP
2Response_reg80.65e-27231311109
                      EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHT CS
     Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealka 92 
                      vl vdD+p+ ++ll+++l++ +y +v++a+++e al++l+e +  +Dl++ D+ mp+mdG+ ll+ i  e  +lp+i+++a+ge +++ + +  
  PH01001777G0350  23 VLAVDDDPVCLKLLESLLRHCKY-HVTTAAHAETALKMLREGKdqFDLVISDVHMPDMDGFMLLEIIGLEM-DLPVIMLSANGETKTVMKGITH 114
                      799********************.***************988888********************996644.8********************* PP

                      TESEEEESS--HHHHHH CS
     Response_reg  93 GakdflsKpfdpeelvk 109
                      Ga d+l+Kp+  +el +
  PH01001777G0350 115 GACDYLVKPVRVKELKN 131
                      ***********999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0363928.3E-1411667IPR017053Response regulator B-type, plant
Gene3DG3DSA:3.40.50.23002.2E-4320156No hitNo description
SuperFamilySSF521721.99E-3620145IPR011006CheY-like superfamily
SMARTSM004485.3E-3321133IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011044.26922137IPR001789Signal transduction response regulator, receiver domain
PfamPF000721.5E-2423131IPR001789Signal transduction response regulator, receiver domain
CDDcd001564.22E-2824136No hitNo description
Gene3DG3DSA:1.10.10.603.8E-28192252IPR009057Homeodomain-like
SuperFamilySSF466893.76E-19192251IPR009057Homeodomain-like
TIGRFAMsTIGR015574.1E-25194247IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 686 aa     Download sequence    Send to blast
MTVGEDSEGK ETAVDKFPAG MRVLAVDDDP VCLKLLESLL RHCKYHVTTA AHAETALKML  60
REGKDQFDLV ISDVHMPDMD GFMLLEIIGL EMDLPVIMLS ANGETKTVMK GITHGACDYL  120
VKPVRVKELK NIWQHVVRRK PDLRNDDDHK VQSRNAEGEQ GGGKRTRKYS GRKRNDVDDS  180
DENKENTDLS TEKKPRVTWT SQLHRKFVEV VNQIGIEKAV PKKILDMMNV DYITRENVAS  240
HLQKYRLYLK RVSKYTSRDS NLFVDSSERW NSVYNKNEPD SFKHYHEHGT RLPSPDVASP  300
NSIFARMNSP SALGPHGLLT TQSIQLSNAQ SNLGMGTVGH GGSLLKDAVS ESLQDSLNGG  360
PPNARNRFSS VNSFANSLKD GALDARKCFP SGPSGNSFAN ISNGTMLDAS ECFPSYHSGN  420
SYATVLRGKL LEASKGIPSC HSGNSFADIS NGGILAPANQ FPVQSPELGN QASVQMKSSS  480
TGLFGTLVGD ASQLPDPGNC STSRQTVVQS KFPDLSLKDG TSLGPSQANI PKINQLACFT  540
ASSGQIPMFG NEVQNQMAAI MSSTESMAGL SEQMAPFNMG SNTSSKEMLN GNFALGSASS  600
ISSALRNPQM DSFVMPAQML NGGGAGGILP VQDGSADQQA VDDQLNYSND FLIRTNRPNG  660
SGELEDIVAG LLNQVRTFLG IFPAE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A2e-24190253164ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01001777G0350
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015693656.10.0PREDICTED: two-component response regulator ORR25-like
SwissprotQ67W500.0ORR25_ORYSJ; Two-component response regulator ORR25
TrEMBLJ3MGA00.0J3MGA0_ORYBR; Uncharacterized protein
STRINGOB06G30440.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP135042132
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25180.11e-103response regulator 12