PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PH01001773G0070 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
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Family | ERF | ||||||||
Protein Properties | Length: 252aa MW: 26868 Da PI: 5.81 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 63.8 | 3.6e-20 | 80 | 130 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkklege 56 +++GVr+++ +g+W+AeIrdp + +r +lg+f+taeeAa ++ a+++l+g+ PH01001773G0070 80 RFRGVRRRP-WGKWAAEIRDP-----KlgRRLWLGTFDTAEEAASVYDSAALRLRGP 130 69*******.**********9.....445**************************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF038123 | 2.1E-42 | 3 | 246 | IPR017392 | AP2/ERF transcription factor ERF/PTI6 |
PROSITE profile | PS51032 | 24.065 | 80 | 137 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.7E-29 | 80 | 137 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.5E-12 | 80 | 129 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 5.17E-21 | 80 | 137 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 2.0E-36 | 80 | 145 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.2E-10 | 81 | 92 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 5.42E-25 | 88 | 136 | No hit | No description |
PRINTS | PR00367 | 2.2E-10 | 103 | 119 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 252 aa Download sequence Send to blast |
MDAQRLPRHH AVRVVRIHLL DADATDSSDD ERRRRRRVRR CVQQIDLLPP SPPAAAVSSG 60 ARVVRTEKKG ACGCVDGRRR FRGVRRRPWG KWAAEIRDPK LGRRLWLGTF DTAEEAASVY 120 DSAALRLRGP GAVTNFSSPS SSPSSDVSVP SPESSTASPP LALTNSPASS TVSPSVPSPE 180 NSTASPSPTS SVFDAEEVIA AAFGMGFEEE ETLDLTEFCL PATGSLWWGT PAAAAAEFGE 240 LGDLDDLFAP V* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 2e-20 | 80 | 136 | 14 | 71 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 31 | 38 | RRRRRRVR |
2 | 31 | 39 | RRRRRRVRR |
3 | 32 | 39 | RRRRRVRR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Component of the cytokinin signaling pathway involved in cotyledons, leaves, and embryos development. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:16832061}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PH01001773G0070 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020172264.1 | 2e-59 | pathogenesis-related genes transcriptional activator PTI6-like | ||||
Swissprot | Q9SUE3 | 7e-35 | CRF4_ARATH; Ethylene-responsive transcription factor CRF4 | ||||
TrEMBL | A0A3B6JGV5 | 3e-58 | A0A3B6JGV5_WHEAT; Uncharacterized protein | ||||
STRING | Pavir.J11205.1.p | 3e-43 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1690 | 36 | 97 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G53290.1 | 6e-22 | cytokinin response factor 3 |
Publications ? help Back to Top | |||
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