PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01001770G0220
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family NAC
Protein Properties Length: 282aa    MW: 31260.6 Da    PI: 9.0958
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01001770G0220genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM167.25.5e-5251371128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkk...leleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 
                      +ppGfrFhP+d+elv +yL +k++g++   +  + +i +vd++k+ePwdLp+++  + kewyfFs rd+kyatg+r+nrat+sgyWkatgkd++
  PH01001770G0220   5 MPPGFRFHPRDDELVLDYLLHKLSGRRaggVYGAVAIVDVDLNKCEPWDLPEAACVGGKEWYFFSLRDRKYATGQRTNRATRSGYWKATGKDRA 98 
                      79************************9776444356***************7666789************************************ PP

              NAM  92 vlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128
                      + +   ++++vg++ktLvfy+grap+g+kt+Wvmhe+r+
  PH01001770G0220  99 ISRGgaGDAAVGMRKTLVFYQGRAPRGRKTEWVMHEFRM 137
                      *998767778***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.44E-573164IPR003441NAC domain
PROSITE profilePS5100555.665164IPR003441NAC domain
PfamPF023652.1E-266137IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MEARMPPGFR FHPRDDELVL DYLLHKLSGR RAGGVYGAVA IVDVDLNKCE PWDLPEAACV  60
GGKEWYFFSL RDRKYATGQR TNRATRSGYW KATGKDRAIS RGGAGDAAVG MRKTLVFYQG  120
RAPRGRKTEW VMHEFRMDDH HPQLAAARHH HLKEDWVLCR VLYKSRTTTP RPSSIVAGVL  180
SNELDLLAAP PPAPLIDAYI AFDGTLMTAV GSYEQVSCFS GLPALPFKGS VSFGDLLALD  240
TSEKMSIRTV LSSMSSNSTS KLELPQNWSQ ENGLSQMWNP L*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A3e-48216512169Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269|PubMed:11114891}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01001770G0220
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0921331e-125FP092133.1 Phyllostachys edulis cDNA clone: bphylf035h20, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020158480.11e-146NAC domain-containing protein 21/22-like
SwissprotQ84TE62e-75NAC22_ARATH; NAC domain-containing protein 21/22
TrEMBLA0A3B6TFK51e-144A0A3B6TFK5_WHEAT; Uncharacterized protein
TrEMBLA0A453RYW41e-144A0A453RYW4_AEGTS; Uncharacterized protein
TrEMBLN1QXF91e-144N1QXF9_AEGTA; NAC domain-containing protein 21/22
STRINGEMT148071e-145(Aegilops tauschii)
STRINGTraes_7DL_BDD45DB24.21e-145(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP101237138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56010.29e-69NAC domain containing protein 1
Publications ? help Back to Top
  1. Le Hénanff G, et al.
    Grapevine NAC1 transcription factor as a convergent node in developmental processes, abiotic stresses, and necrotrophic/biotrophic pathogen tolerance.
    J. Exp. Bot., 2013. 64(16): p. 4877-93
    [PMID:24043850]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Xiao D, et al.
    SENESCENCE-SUPPRESSED PROTEIN PHOSPHATASE Directly Interacts with the Cytoplasmic Domain of SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE and Negatively Regulates Leaf Senescence in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1275-91
    [PMID:26304848]
  4. Huo X,Wang C,Teng Y,Liu X
    Identification of miRNAs associated with dark-induced senescence in Arabidopsis.
    BMC Plant Biol., 2015. 15: p. 266
    [PMID:26530097]
  5. Chen X, et al.
    Auxin-Independent NAC Pathway Acts in Response to Explant-Specific Wounding and Promotes Root Tip Emergence during de Novo Root Organogenesis in Arabidopsis.
    Plant Physiol., 2016. 170(4): p. 2136-45
    [PMID:26850273]
  6. Liu C,Wang B,Li Z,Peng Z,Zhang J
    TsNAC1 Is a Key Transcription Factor in Abiotic Stress Resistance and Growth.
    Plant Physiol., 2018. 176(1): p. 742-756
    [PMID:29122985]