PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PH01001761G0380

Organism

Phyllostachys heterocycla

Taxonomic ID

38705

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys

Family

GRAS

Protein Properties

Length: 735aa MW: 82792.4 Da PI: 6.4141

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PH01001761G0380	genome	ICBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	393.6	2.2e-120	359	730	1	374
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 l++ L++cA+av+++d + a++lL+++++++ p+gd +qRla +f+ +L+arla+++s+ly++l +++t+ s+ l+a++l+ ++P+ ++s PH01001761G0380 359 LRTILIHCAQAVAADDRRTANELLKQIRQHSKPNGDGTQRLAYCFADGLEARLAGTGSQLYHKLVAKRTT---ASDMLKAYHLYLAACPFKRLS 449 5789**********************************************************999999...9**************** PP GRAS 95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrl 186 h++ Nq+Il ++++++vHiiDf+i G+QWp+L++ L++R++gpp+lRiTg++ p++g +e++eetg+rLa++Ae++gvpfe++ +a+++ PH01001761G0380 450 HFLSNQTILSMTKNASKVHIIDFGIYFGFQWPCLIRRLSKREGGPPKLRITGIDVPQPGfrPTERIEETGQRLAEYAEKFGVPFEYQG-IASKW 542 ******************************************************9*************************.7 PP GRAS 187 edleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklprese 280 e++++e+L+v ++E+++Vn+ ++ +l de+v+++s+r++vL+++++++P ++++ + +++ + F +rf eal ++salfd+le+++pr++ PH01001761G0380 543 ETIRVEDLKVAKDEVVIVNCLYRFRNLIDETVAVDSPRNRVLNTIRQVNPAIFIHGIVNGSYSVPFFITRFREALFHFSALFDMLETTVPRDDA 636 ****************************************************************************************** PP GRAS 281 erikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 +r+ +Er l+gre+ nv+aceg++r+er et+++W+ r +aGF + pl+++++++ak ++ ++ + + ++e++g+l++gWk+r ++++S W+ PH01001761G0380 637 QRTLIERDLFGREALNVIACEGSDRVERPETYKQWQVRNLRAGFVQSPLNQDIVMKAKDKVKDIYHKDFVIDEDNGWLLQGWKGRIIYAISTWK 730 *************************************************************888***********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	69.104	333	710	IPR005202	Transcription factor GRAS
Pfam	PF03514	7.4E-118	359	730	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 735 aa Download sequence Send to blast
MGLDNTLGEL SGMFCGLSYD GYTDHSTPSD YFRFTDPQPV ILPQMAAEPN SNPSSNLSRS 60 ANSETDNPED WEFISDESLN YISRMLMEED IDEKVSMYQE ESAALRAAAK PFYDILGHKF 120 PPSPDRQLKP WSLDSPSESS SSIHAQSLAS TVTSSSTGGA VDSNQRHYGG HREQLEAYRG 180 LCGQSLQLLV GPSSDVCNAA EALEDPLITN GRIPEYLFES LPTWDFRRGV EEARKFLPGS 240 DKLVIDLEAG DAARPREAGK DVSLNGSKAE VLKVRKNRQS EDLDLMEGRN IKQSAFCSDE 300 PDWIEMFDDL LRQTEKKATV LREMMRNEAS KNSQVTQTKG ASGGRSRGRK PTTKDVVDLR 360 TILIHCAQAV AADDRRTANE LLKQIRQHSK PNGDGTQRLA YCFADGLEAR LAGTGSQLYH 420 KLVAKRTTAS DMLKAYHLYL AACPFKRLSH FLSNQTILSM TKNASKVHII DFGIYFGFQW 480 PCLIRRLSKR EGGPPKLRIT GIDVPQPGFR PTERIEETGQ RLAEYAEKFG VPFEYQGIAS 540 KWETIRVEDL KVAKDEVVIV NCLYRFRNLI DETVAVDSPR NRVLNTIRQV NPAIFIHGIV 600 NGSYSVPFFI TRFREALFHF SALFDMLETT VPRDDAQRTL IERDLFGREA LNVIACEGSD 660 RVERPETYKQ WQVRNLRAGF VQSPLNQDIV MKAKDKVKDI YHKDFVIDED NGWLLQGWKG 720 RIIYAISTWK PNNN*

Sequence ? help Back to Top

Protein Sequence Length: 735 aa Download sequence Send to blast

MGLDNTLGEL SGMFCGLSYD GYTDHSTPSD YFRFTDPQPV ILPQMAAEPN SNPSSNLSRS  60
ANSETDNPED WEFISDESLN YISRMLMEED IDEKVSMYQE ESAALRAAAK PFYDILGHKF  120
PPSPDRQLKP WSLDSPSESS SSIHAQSLAS TVTSSSTGGA VDSNQRHYGG HREQLEAYRG  180
LCGQSLQLLV GPSSDVCNAA EALEDPLITN GRIPEYLFES LPTWDFRRGV EEARKFLPGS  240
DKLVIDLEAG DAARPREAGK DVSLNGSKAE VLKVRKNRQS EDLDLMEGRN IKQSAFCSDE  300
PDWIEMFDDL LRQTEKKATV LREMMRNEAS KNSQVTQTKG ASGGRSRGRK PTTKDVVDLR  360
TILIHCAQAV AADDRRTANE LLKQIRQHSK PNGDGTQRLA YCFADGLEAR LAGTGSQLYH  420
KLVAKRTTAS DMLKAYHLYL AACPFKRLSH FLSNQTILSM TKNASKVHII DFGIYFGFQW  480
PCLIRRLSKR EGGPPKLRIT GIDVPQPGFR PTERIEETGQ RLAEYAEKFG VPFEYQGIAS  540
KWETIRVEDL KVAKDEVVIV NCLYRFRNLI DETVAVDSPR NRVLNTIRQV NPAIFIHGIV  600
NGSYSVPFFI TRFREALFHF SALFDMLETT VPRDDAQRTL IERDLFGREA LNVIACEGSD  660
RVERPETYKQ WQVRNLRAGF VQSPLNQDIV MKAKDKVKDI YHKDFVIDED NGWLLQGWKG  720
RIIYAISTWK PNNN*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	3e-51	363	730	8	375	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PH01001761G0380

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004984720.1	0.0	scarecrow-like protein 9
Refseq	XP_004984721.1	0.0	scarecrow-like protein 9
TrEMBL	A0A0E0KHM8	0.0	A0A0E0KHM8_ORYPU; Uncharacterized protein
STRING	OPUNC03G27510.1	0.0	(Oryza punctata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1505	38	118

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37650.1	0.0	GRAS family protein