PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PH01001738G0330 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
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Family | MYB_related | ||||||||
Protein Properties | Length: 203aa MW: 21448.4 Da PI: 4.4907 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 41 | 4.5e-13 | 3 | 34 | 15 | 48 |
HHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 15 avkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +++ lG++ W++Iar+++ gRt++++k++w++yl PH01001738G0330 3 LHAALGNK-WSRIARHLP-GRTDNEVKNYWNSYL 34 7899****.*********.*************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 20.846 | 1 | 38 | IPR017930 | Myb domain |
SMART | SM00717 | 0.0065 | 2 | 36 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 8.9E-17 | 2 | 35 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.87E-10 | 2 | 39 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 7.4E-11 | 3 | 34 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 7.34E-9 | 3 | 34 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 203 aa Download sequence Send to blast |
MSLHAALGNK WSRIARHLPG RTDNEVKNYW NSYLKKRVES SKQGPNTPAP ATNSAADSDD 60 SQSLKPGETT QEPASQPSNS DSSEPPHESS SADSSCLTMT EPPVRPHAPV TPKVMFADWL 120 NMDYISGQIA AAPGLNAAGV VGAGASPGDH HQVMSQGSVQ VDGPSSVDDS LHGFGDNGTC 180 WEFQEQFDSI DLLSISELFG LN* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PH01001738G0330 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FP096849 | 1e-142 | FP096849.1 Phyllostachys edulis cDNA clone: bphyem207b10, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004953256.1 | 7e-85 | transcription factor MYB4 | ||||
TrEMBL | A0A0A9F8A8 | 1e-94 | A0A0A9F8A8_ARUDO; Uncharacterized protein | ||||
STRING | Si017947m | 3e-84 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1707 | 37 | 109 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G52260.1 | 1e-16 | myb domain protein 19 |