PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PH01001726G0070

Organism

Phyllostachys heterocycla

Taxonomic ID

38705

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys

Family

HB-other

Protein Properties

Length: 665aa MW: 73784.6 Da PI: 5.5481

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PH01001726G0070	genome	ICBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	31.2	3.9e-10	473	511	14	52
HHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHH CS Homeobox 14 eLeelFeknrypsaeereeLAkklgLterqVkvWFqNrR 52 +L e+F+ ++yps++ +e LA++lgLt qV++WF R PH01001726G0070 473 RLREHFKIDQYPSRAVKESLAQELGLTFHQVSTWFASTR 511 79*********************************8666 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00389	1.1E-8	457	521	IPR001356	Homeobox domain
CDD	cd00086	1.53E-9	461	515	No hit	No description
SuperFamily	SSF46689	4.28E-10	472	519	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	3.1E-10	472	510	IPR009057	Homeodomain-like
Pfam	PF00046	1.4E-7	473	511	IPR001356	Homeobox domain
PROSITE profile	PS50071	12.422	474	517	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 665 aa Download sequence Send to blast
MDKTTTSGPV EGNGEIGNDA SSSQNPKTCR HQSLPSTSQA TEKTMCARKN YKKAANRGRK 60 GSQVLAGRKN SLRSSHTNVR VLHFMSTAKN SPSESVHTLV QPAAKRTTRG KPAKNPKNEF 120 SKIRQRVRYI LNRMNYEQSL IEAYASEGWK RQSLEKIRPE KELERAKAEI LRCKLRIREA 180 FQNLDYRLSE GKLEESLFDS EGEISSEDKV FPEAVAFANG PKQNDVSDLP SDGSEDNDFD 240 PNLAEECVAS QAEGSSEEDE DEGSDSDDSN FVTSSDNSEP LKDKEKVDYL GLPSEDSEDD 300 DYDPAGPDSD KDTQKKQSSS DESDFTSDSD DLCAEIAKSC GQDEVSSGSK AGDPTNDLEG 360 TTVRANTENS NITSKDIVMD QDVVLPVSGR REVQRLDYKK LYDEAYGGAS SDSSDGEEWS 420 GKSTPEKDNE EQSETDSFAC KSSRRTGAVH QSNELIPQSA RQSLHPDALH GSRLREHFKI 480 DQYPSRAVKE SLAQELGLTF HQVSTWFAST RHYTRVATKK GTHLENHSTK RNRSSVVASV 540 QVTDPKETMM EKRNVCKNDV RNKEMTSRNP NEVLKKDSSV KQDINGGRRM LVTPQESSQN 600 YTTTLGLVGC SKGGSRDNHC ENTSSRDVGR PKDNSAEDQN LGLELDEGRK KAILRELKRR 660 KMGR*

Sequence ? help Back to Top

Protein Sequence Length: 665 aa Download sequence Send to blast

MDKTTTSGPV EGNGEIGNDA SSSQNPKTCR HQSLPSTSQA TEKTMCARKN YKKAANRGRK  60
GSQVLAGRKN SLRSSHTNVR VLHFMSTAKN SPSESVHTLV QPAAKRTTRG KPAKNPKNEF  120
SKIRQRVRYI LNRMNYEQSL IEAYASEGWK RQSLEKIRPE KELERAKAEI LRCKLRIREA  180
FQNLDYRLSE GKLEESLFDS EGEISSEDKV FPEAVAFANG PKQNDVSDLP SDGSEDNDFD  240
PNLAEECVAS QAEGSSEEDE DEGSDSDDSN FVTSSDNSEP LKDKEKVDYL GLPSEDSEDD  300
DYDPAGPDSD KDTQKKQSSS DESDFTSDSD DLCAEIAKSC GQDEVSSGSK AGDPTNDLEG  360
TTVRANTENS NITSKDIVMD QDVVLPVSGR REVQRLDYKK LYDEAYGGAS SDSSDGEEWS  420
GKSTPEKDNE EQSETDSFAC KSSRRTGAVH QSNELIPQSA RQSLHPDALH GSRLREHFKI  480
DQYPSRAVKE SLAQELGLTF HQVSTWFAST RHYTRVATKK GTHLENHSTK RNRSSVVASV  540
QVTDPKETMM EKRNVCKNDV RNKEMTSRNP NEVLKKDSSV KQDINGGRRM LVTPQESSQN  600
YTTTLGLVGC SKGGSRDNHC ENTSSRDVGR PKDNSAEDQN LGLELDEGRK KAILRELKRR  660
KMGR*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional repressor involved in the regulation of gibberrelin (GA) signaling. Binds to the 5'-GATC-3' motif of HD16/EL1 promoter. Functions as a positive regulator of GA signaling by suppressing the expression of HD16/EL1, a negative regulator of GA signaling. {ECO:0000269\|PubMed:21951842}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PH01001726G0070

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by gibberellin. {ECO:0000269\|PubMed:21951842}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001338675.1	1e-117	uncharacterized protein LOC542536
Refseq	XP_004961485.1	1e-123	homeobox protein HOX1A isoform X1
Refseq	XP_022681087.1	1e-124	homeobox protein HOX1A isoform X2
Swissprot	Q8H991	3e-99	HAZ1_ORYSJ; Homeobox protein HAZ1
TrEMBL	A0A0E0A746	1e-169	A0A0E0A746_9ORYZ; Uncharacterized protein
TrEMBL	A0A446K7A3	1e-167	A0A446K7A3_TRITD; Uncharacterized protein
STRING	OGLUM06G08790.1	1e-170	(Oryza glumipatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4393	37	68

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19510.1	2e-34	Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Wen BQ,Xing MQ,Zhang H,Dai C,Xue HW Rice homeobox transcription factor HOX1a positively regulates gibberellin responses by directly suppressing EL1. J Integr Plant Biol, 2011. 53(11): p. 869-78 [PMID:21951842]