PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01001696G0040
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family G2-like
Protein Properties Length: 325aa    MW: 33880.1 Da    PI: 6.1191
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01001696G0040genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like69.64.9e-22108150244
          G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtle 44 
                      pr+rWt+ LH+rFv+ave LGG+e+AtPk++lelm+vk+Ltl+
  PH01001696G0040 108 PRMRWTTALHARFVHAVELLGGHERATPKSVLELMNVKDLTLA 150
                      9****************************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512575125No hitNo description
SuperFamilySSF466891.68E-8105149IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.9E-18106150IPR009057Homeodomain-like
TIGRFAMsTIGR015571.8E-14108149IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MLQRNQLPNL SLRISPPAVS SAASCDITTA AKPLPTEPNA ETYAEGSGEV GFFANPSSGA  60
EPPGLSLGLG TPAHADAGRQ SHLQPQGCAF KRAARTSLPG SKRSVRAPRM RWTTALHARF  120
VHAVELLGGH ERATPKSVLE LMNVKDLTLA VEAGGGGGDG GGVVPMPCDD MAGICSSPAA  180
ASAPPAAATT SAAYFFCAST ATAPLAVVPS PSPSIPPRRA DHAPVLEKGI AIVDSLHRCQ  240
RHNYSPVLQD TQEAQEEVTV HLPTGAVHAS VEAIATNCSS PERSSPSLTS LELPPDDTYA  300
PNLEISLGRQ DWNMEHPEEL SLKYL
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01001696G0040
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0948800.0FP094880.1 Phyllostachys edulis cDNA clone: bphylf040g11, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006650649.11e-112PREDICTED: probable transcription factor RL9
TrEMBLJ3LT601e-111J3LT60_ORYBR; Uncharacterized protein
STRINGOB03G42360.11e-112(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP65543750
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42630.22e-32G2-like family protein