PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PH01001683G0170 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
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Family | NAC | ||||||||
Protein Properties | Length: 358aa MW: 39405.1 Da PI: 6.7782 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 171.2 | 3.2e-53 | 6 | 134 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 lppGfrFhPtd+elv +yLk+kv++ k+el evi+ +d+yk+ePw+Lp k + +++ ew+fF++rd+ky++g+r+nrat++gyWkatgkd+++ PH01001683G0170 6 LPPGFRFHPTDDELVGYYLKRKVDNLKIEL-EVIPVIDLYKFEPWELPeKsFLPKRDLEWFFFCPRDRKYPNGSRTNRATTTGYWKATGKDRKI 98 79****************************.99**************95334445667************************************ PP NAM 93 lskkgelvglkktLvfykgrapkgektdWvmheyrl 128 +++g++ gl+ktLvfykgrap g +tdWvmheyrl PH01001683G0170 99 ACEGGSVYGLRKTLVFYKGRAPGGDRTDWVMHEYRL 134 **********************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.22E-60 | 2 | 156 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 57.838 | 6 | 157 | IPR003441 | NAC domain |
Pfam | PF02365 | 4.3E-29 | 7 | 134 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0008283 | Biological Process | cell proliferation | ||||
GO:0071365 | Biological Process | cellular response to auxin stimulus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 358 aa Download sequence Send to blast |
MGTMRLPPGF RFHPTDDELV GYYLKRKVDN LKIELEVIPV IDLYKFEPWE LPEKSFLPKR 60 DLEWFFFCPR DRKYPNGSRT NRATTTGYWK ATGKDRKIAC EGGSVYGLRK TLVFYKGRAP 120 GGDRTDWVMH EYRLCQDLVH GSSNFIGAYA LCRVIKRHEA GLQGEPAKAK GTSSSHQLSS 180 RGQMSKVSSS SSIVTTDHQL SRSNAPFTPT NSSPPLDISS TEACNAFQNS FPYGGEVCDV 240 TATPTNGNVM PSSTHSPLCL SMCTPQDTFF ISGGGGGDFP PSESHSHSHS HVPFFGDMGS 300 ISEHELKWDN LTCASPFSAT GAELWNPANA TPLLCRQASD GDDLTAWFSS DENMVVF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 3e-52 | 1 | 161 | 12 | 169 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 3e-52 | 1 | 161 | 12 | 169 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 3e-52 | 1 | 161 | 12 | 169 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 3e-52 | 1 | 161 | 12 | 169 | NO APICAL MERISTEM PROTEIN |
3swm_A | 3e-52 | 1 | 161 | 15 | 172 | NAC domain-containing protein 19 |
3swm_B | 3e-52 | 1 | 161 | 15 | 172 | NAC domain-containing protein 19 |
3swm_C | 3e-52 | 1 | 161 | 15 | 172 | NAC domain-containing protein 19 |
3swm_D | 3e-52 | 1 | 161 | 15 | 172 | NAC domain-containing protein 19 |
3swp_A | 3e-52 | 1 | 161 | 15 | 172 | NAC domain-containing protein 19 |
3swp_B | 3e-52 | 1 | 161 | 15 | 172 | NAC domain-containing protein 19 |
3swp_C | 3e-52 | 1 | 161 | 15 | 172 | NAC domain-containing protein 19 |
3swp_D | 3e-52 | 1 | 161 | 15 | 172 | NAC domain-containing protein 19 |
4dul_A | 3e-52 | 1 | 161 | 12 | 169 | NAC domain-containing protein 19 |
4dul_B | 3e-52 | 1 | 161 | 12 | 169 | NAC domain-containing protein 19 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00439 | DAP | Transfer from AT4G17980 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PH01001683G0170 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006662089.1 | 1e-161 | PREDICTED: NAC domain-containing protein 48-like | ||||
TrEMBL | J3N537 | 1e-159 | J3N537_ORYBR; Uncharacterized protein | ||||
STRING | OB10G26350.1 | 1e-160 | (Oryza brachyantha) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6209 | 38 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G17980.1 | 2e-85 | NAC domain containing protein 71 |