PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01001681G0050
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family HB-other
Protein Properties Length: 824aa    MW: 91382.4 Da    PI: 7.1416
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01001681G0050genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox43.55.5e-143587557
                     SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
         Homeobox  5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57
                     t+ ++ q++ Le+++ + +yp+ e+++e A+++gL  +qV++WF+ rR ke++
  PH01001681G0050 35 TKKSPLQIQMLERFYSEVQYPKPEDMAEYATSVGLAYSQVRIWFKERRRKERR 87
                     566899*********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.24E-122489IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.2E-132891IPR009057Homeodomain-like
PROSITE profilePS5007114.7222888IPR001356Homeobox domain
SMARTSM003896.5E-143092IPR001356Homeobox domain
PfamPF000462.4E-113587IPR001356Homeobox domain
CDDcd000864.17E-83578No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 824 aa     Download sequence    Send to blast
MASLWARRGL EVAQLVCGQG MMINGLEAKR ENAGTKKSPL QIQMLERFYS EVQYPKPEDM  60
AEYATSVGLA YSQVRIWFKE RRRKERRREM EAIGAHVERC SSKSSSFSQG PMHNSVGLQP  120
EDDSSVDRGM SFIRDKHALR SQVLFPKDYI LRKVFRKDGP PLGSEFNPLP QSAHGHLRDM  180
PPVANEGSNF IDETGCLRSL RPFDDCDRLE DHDDGKLIQK QIMAQKKVDK RSRPPPNKRK  240
VPCSRVTASK EHPPMECHLS VNESESSELQ TEQPTLVDDE ELELSELQAG PNPLRCSVHL  300
SSSGGHGCPL CKDLLATFPP PSVKMKQPFS TRPWESSPEM VKKLFQDSLL LGKIHVGLVK  360
LLSLNTERGS GGFGSKHHTV NRDFFNKEKN QMVKHGLRPR TLKGELFALL LKKGSGGLKV  420
SELAKSPEIV DINLSGTSVV EQLIYSTLST DITLFEKIVP SAYRLRVDPQ IKGKEDPRSD  480
TEDSGSVDDD GDACSSGDES VRGCVLGAEV DGENQLRGMM IASRRRGSGV DKQIPKLPHM  540
TESDGSQEMS FSEHECRVVK RKRKDIHENL NKCSEIDESY SGERWLLGLT EGEYSDLSMD  600
VVSGAGSVPR LQEPRRVLSN ILRAPSHASG SSYSLDSSKQ GRSGSRRSQD YIANSGRNES  660
STGVAHQPQV VLLGSDRRIC HSTFEVSFDL EEGYAIHVAT CKEPDDVYGL PNHKVLSSQL  720
QALKAAMHAI EACMPEAAFA GLWMKSLHKL WVKRLRRTSS LPGLLQVLVD FVGAMGEDWL  780
YKSSSSEFTE FNLAQIPSVF MGSVLDGGLP HLAQKNTPGE EEQ*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18088RRRKERRRE
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01001681G0050
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015646956.10.0homeobox-DDT domain protein RLT3 isoform X1
TrEMBLB8B8L70.0B8B8L7_ORYSI; Uncharacterized protein
TrEMBLB9FU940.0B9FU94_ORYSJ; Uncharacterized protein
STRINGOGLUM07G22360.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP45563350
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G12750.12e-35Homeodomain-like transcriptional regulator