PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01001664G0400
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family GRAS
Protein Properties Length: 584aa    MW: 64947.8 Da    PI: 4.6395
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01001664G0400genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS418.65.2e-1282145822373
             GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                      ++lL++cAea+s+ +  +aq+++++l++ ++ +gdp qR+aay++e+Laa++++s++++y+al+++e++   s  +l+a+++++ev+P++++++
  PH01001664G0400 214 KQLLFDCAEAISEYSIDEAQSIITELRQKVAIQGDPSQRIAAYLVEGLAATMQSSGKGIYRALRCKEAP---SLYQLSAMQILFEVCPCFRLGF 304
                      589*****************************************************************9...999******************* PP

             GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrle 187
                      ++aN aIlea +gee vHiiDfdi+qG Q+++L+q L + +++p +lRiTgv++pes+      l+ +g+rL+k+Ae +gv+fef++ v  ++ 
  PH01001664G0400 305 MAANFAILEACKGEEIVHIIDFDINQGSQYITLIQFLHNSSNKPRHLRITGVDDPESVqrAVGGLKVIGQRLEKLAEDCGVSFEFRA-VGANVG 397
                      ********************************************************99878889***********************.799*** PP

             GRAS 188 dleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpresee 281
                      d+++ +L+++pgEal+Vn+++qlh+l+desvs+ +erd++L++vk+l+Pk+v++veq+a++n+++Fl+rf e  +yysalfdsl+a+lpres +
  PH01001664G0400 398 DVTPAMLDCHPGEALIVNFAFQLHHLPDESVSIVNERDQLLRMVKGLQPKLVTLVEQDANTNTTPFLTRFREVYDYYSALFDSLDATLPRESPD 491
                      ********************************************************************************************** PP

             GRAS 282 rikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                      r++vEr++l+reivn++aceg +r+er e ++kWr+r+++aGF p+p+++++ + +k+ll+ + +  y+ e+ ++ l +gW d++L++ SaW
  PH01001664G0400 492 RMNVERQCLAREIVNILACEGPDRVERYEVAGKWRARMSMAGFVPYPFNNNVIDGIKSLLKSYCD-KYKFEKVHEGLHFGWGDKTLIVSSAW 582
                      ***************************************************************95.5************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098562.598187564IPR005202Transcription factor GRAS
PfamPF035141.8E-125214582IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 584 aa     Download sequence    Send to blast
MSFVRQADPS TSCAESPYVH KFGPPSSGFS TQRFASDTEL LRHGPQPYNA EGFGQSGFTE  60
TPCATFQNSF YNQQAAPTPY CVTAKGQTAP AVLYRQSESQ FNASTYSPVD SNISQQNSQS  120
VPENQSSGLD VEFDEDEIRL KLQELEHALL DDGDEVLFDM SGSINDEWTD HMKNNNEWTN  180
PMKNILLPNS PKESSPESSL SCADSSNGEA QPPKQLLFDC AEAISEYSID EAQSIITELR  240
QKVAIQGDPS QRIAAYLVEG LAATMQSSGK GIYRALRCKE APSLYQLSAM QILFEVCPCF  300
RLGFMAANFA ILEACKGEEI VHIIDFDINQ GSQYITLIQF LHNSSNKPRH LRITGVDDPE  360
SVQRAVGGLK VIGQRLEKLA EDCGVSFEFR AVGANVGDVT PAMLDCHPGE ALIVNFAFQL  420
HHLPDESVSI VNERDQLLRM VKGLQPKLVT LVEQDANTNT TPFLTRFREV YDYYSALFDS  480
LDATLPRESP DRMNVERQCL AREIVNILAC EGPDRVERYE VAGKWRARMS MAGFVPYPFN  540
NNVIDGIKSL LKSYCDKYKF EKVHEGLHFG WGDKTLIVSS AWH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A6e-5822058225377Protein SCARECROW
5b3h_D6e-5822058225377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01001664G0400
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004962026.10.0scarecrow-like protein 1
SwissprotQ9SDQ30.0SCL1_ARATH; Scarecrow-like protein 1
TrEMBLA0A1E5VSU20.0A0A1E5VSU2_9POAL; Scarecrow-like protein 1
STRINGPavir.J01797.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51753860
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21450.10.0SCARECROW-like 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]