PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01001664G0230
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family NAC
Protein Properties Length: 457aa    MW: 50426.9 Da    PI: 4.4189
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01001664G0230genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM157.17.5e-4981351128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                      lppGfrFhPtd elv++yLk+k+ gkkl + ++i+ev++yk+ PwdLp k ++++++ ew+fF++ dkky++g+r+nr t +gyWk++gkd+++
  PH01001664G0230   8 LPPGFRFHPTDVELVSYYLKRKIMGKKLLV-QAISEVELYKFAPWDLPdKsCLRSKDLEWFFFCPPDKKYPNGSRTNRRTPNGYWKTSGKDRTI 100
                      79*************************999.88**************96347777888************************************ PP

              NAM  93 lskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                         +++ vg kktLvf++g+apkg++tdWvm ey++
  PH01001664G0230 101 EL-NSRIVGSKKTLVFHEGKAPKGNRTDWVMYEYKM 135
                      **.999****************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.02E-583158IPR003441NAC domain
PROSITE profilePS5100555.3188158IPR003441NAC domain
PfamPF023651.9E-259134IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 457 aa     Download sequence    Send to blast
MVMTQACLPP GFRFHPTDVE LVSYYLKRKI MGKKLLVQAI SEVELYKFAP WDLPDKSCLR  60
SKDLEWFFFC PPDKKYPNGS RTNRRTPNGY WKTSGKDRTI ELNSRIVGSK KTLVFHEGKA  120
PKGNRTDWVM YEYKMEDGDL VSAGFSKDAY VLCKIFKKSG LGPRIGEQYG APFNEGEWEN  180
ADAETSMFPL MSSSELVNSA EDPHVQHAGT ARAVEQLPVH RSSATCAQKE SSSEHVTATT  240
SVEDLGYVAA DCALQELPPK QSVNSFGDGM FSANNRSNEV NNVYNPPGID GFLLEELSRF  300
LNDSPHHDSP VGERSGLPPM SEAEAQALEV NTCDLYNELA GLAGLGGVSN DDGFCASNVG  360
ITDHTFQPTY SELASSDDYI ELSDLLAPGA TFYELPVPSN QFWQYPLDQS TYDGHYDDGA  420
TLSAAFAASD FANNSDFVTD FVDTNYPDPT MQYPFS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A5e-49315812165NO APICAL MERISTEM PROTEIN
1ut4_B5e-49315812165NO APICAL MERISTEM PROTEIN
1ut7_A5e-49315812165NO APICAL MERISTEM PROTEIN
1ut7_B5e-49315812165NO APICAL MERISTEM PROTEIN
4dul_A5e-49315812165NAC domain-containing protein 19
4dul_B5e-49315812165NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01001664G0230
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB3621600.0AB362160.1 Oryza sativa Japonica Group mRNA for transcription factor, complete cds.
GenBankAK0995400.0AK099540.1 Oryza sativa Japonica Group cDNA clone:J013032G17, full insert sequence.
GenBankEU8469980.0EU846998.1 Oryza sativa Japonica Group clone KCS104B01 NAM-like protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014660428.10.0NAC domain-containing protein 82
TrEMBLA0A368QI290.0A0A368QI29_SETIT; Uncharacterized protein
TrEMBLA0A3L6T6410.0A0A3L6T641_PANMI; NAC domain-containing protein 82-like
STRINGPavir.J02083.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP47313664
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64060.12e-79NAC domain containing protein 103