PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01001652G0230
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family NAC
Protein Properties Length: 654aa    MW: 71089.7 Da    PI: 4.3379
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01001652G0230genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM169.41.2e-52191471129
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                      l+pGfrFhPtdeelv++yLk+kv g++l++ ++i+evd+yk+ePwdLp+  ++++++++wyfFs+ d+k+++  r+nrat+ gyWk+tgkd+ev
  PH01001652G0230  19 LAPGFRFHPTDEELVSYYLKRKVLGRPLKV-DAIAEVDLYKLEPWDLPArsRLRSRDSQWYFFSRLDRKHSNRARTNRATAGGYWKTTGKDREV 111
                      579***************************.99***************4357888999************************************ PP

              NAM  93 lskkgelvglkktLvfykgrapkgektdWvmheyrle 129
                       + + ++ g+kktLvf+ grapkge+t+Wvmheyrle
  PH01001652G0230 112 RN-GARVAGMKKTLVFHAGRAPKGERTNWVMHEYRLE 147
                      *9.999*****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.93E-6110167IPR003441NAC domain
PROSITE profilePS5100559.08119167IPR003441NAC domain
PfamPF023652.3E-2821146IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009644Biological Processresponse to high light intensity
GO:0009962Biological Processregulation of flavonoid biosynthetic process
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 654 aa     Download sequence    Send to blast
MTHPSSSSSS APAAETTSLA PGFRFHPTDE ELVSYYLKRK VLGRPLKVDA IAEVDLYKLE  60
PWDLPARSRL RSRDSQWYFF SRLDRKHSNR ARTNRATAGG YWKTTGKDRE VRNGARVAGM  120
KKTLVFHAGR APKGERTNWV MHEYRLEGDD AAGIPQDSFV VCRIFQKAGP GPQNGAQYGA  180
PFVEEDWEED EEGDVGLLPV ERNDIADREV PGAMEKGYLQ MNDLTQVLGV QNGNGSVTLP  240
VSDTSNNSNH SEAVDGNSGD ILSDPNLGSN FLQYVDPGDQ NSLMLNENML SNANAGDVLN  300
SSSPNDGFLE LKDFADAANL EYPLGNDSTV WPSDGWPWKT PDSLEAVNGA NNVFPPLTGE  360
QTFQPEELEQ LLQSLQDDSP LGSTNTDPPH SSITNSVNPE DDSLMFYDAP FDSTMFDDGF  420
RQQNGFLGSP ATNLSGIDMV DDGMPYYDAV DDNLFNDILG SVQQSAGSSS HAFNGPILTQ  480
EVNNTTYAYS PTQKVLEPNF VVGAPSSARL PEAGSQLNCV VLPDAQAKNS SIGNRFVKML  540
DSISAPPAFA AEFPANIRKS LAPISGAHPN IIHVSAEVIS IGSLTVTSRP DKWSIEKDQG  600
MELLFSAGFE PDSRIHCGCN TITAVLRGGF CLFFCSAIML LVSYEVGMYI YGK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-47131679168Stress-induced transcription factor NAC1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00059PBMTransfer from AT5G04410Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01001652G0230
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025820240.10.0NAC domain-containing protein 53-like
TrEMBLA0A2S3I4R10.0A0A2S3I4R1_9POAL; Uncharacterized protein
TrEMBLA0A2T7DAU20.0A0A2T7DAU2_9POAL; Uncharacterized protein
STRINGSb07g023900.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP71073650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04410.12e-86NAC domain containing protein 2