PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PH01001651G0380

Organism

Phyllostachys heterocycla

Taxonomic ID

38705

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys

Family

Nin-like

Protein Properties

Length: 416aa MW: 44539.8 Da PI: 5.2409

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PH01001651G0380	genome	ICBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	41	3.7e-13	288	337	2	51
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiks 51 k+is+ +++ y +++ ++AAk+L+++ + L r CR + ++RWP R+i+ PH01001651G0380 288 MKNISITEIAPYLHMSKEAAAKKLDISSSSLTRLCRLNRLARWPGRRIEA 337 599********************************************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	13.913	272	358	IPR003035	RWP-RK domain
Pfam	PF02042	1.2E-12	290	338	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 416 aa Download sequence Send to blast
MDPNYPQYTA PEGTPVVPTP EATNLQATIP PPPPPPAPAP APAPAPVLHG QPADSSTESE 60 PTDEDTNAFL QSLADINGEP VFEPYEAGDM DCSDCTVLRE VLHQSDSRQV YFRIHGGDAP 120 STFGHATFEI RHAGIAGLAP TFLFFYVALF QRTHEWVGHF IARIVDMLRG DATGQVYDSY 180 STFCSAVCSN TVSPPLTNDP YMTAMLGNLS SLRQMFASST AYRTTADVAV PPAAPPPPAG 240 SNLSSASNIA VAPPAPATTH ASTHATSSSS PADSRRPRRK VAEQRDRMKN ISITEIAPYL 300 HMSKEAAAKK LDISSSSLTR LCRLNRLARW PGRRIEALNN KIQLLEEDAA KGHSPHGLLT 360 LKDEIEKLQA ERAEIYAQLE EIIEKVTDEH PTGHNAEDPP SPGGGNAGAF PVGVN*

Sequence ? help Back to Top

Protein Sequence Length: 416 aa Download sequence Send to blast

MDPNYPQYTA PEGTPVVPTP EATNLQATIP PPPPPPAPAP APAPAPVLHG QPADSSTESE  60
PTDEDTNAFL QSLADINGEP VFEPYEAGDM DCSDCTVLRE VLHQSDSRQV YFRIHGGDAP  120
STFGHATFEI RHAGIAGLAP TFLFFYVALF QRTHEWVGHF IARIVDMLRG DATGQVYDSY  180
STFCSAVCSN TVSPPLTNDP YMTAMLGNLS SLRQMFASST AYRTTADVAV PPAAPPPPAG  240
SNLSSASNIA VAPPAPATTH ASTHATSSSS PADSRRPRRK VAEQRDRMKN ISITEIAPYL  300
HMSKEAAAKK LDISSSSLTR LCRLNRLARW PGRRIEALNN KIQLLEEDAA KGHSPHGLLT  360
LKDEIEKLQA ERAEIYAQLE EIIEKVTDEH PTGHNAEDPP SPGGGNAGAF PVGVN*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	275	279	RPRRK

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PH01001651G0380

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP14429	10	12

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76350.1	2e-07	Nin-like family protein