PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01001639G0300
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family CO-like
Protein Properties Length: 359aa    MW: 38363.6 Da    PI: 4.9103
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01001639G0300genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box19.22.5e-063877437
         zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg.......H 37
                       C++++  ++  +C+ ++  lC  C  + H g       H
  PH01001639G0300 38 SPCDNCSGMPAVVYCRADSARLCLPCDRHVH-GanavsssH 77
                     68***************************99.435666666 PP
2CCT61.82.2e-21317357343
              CCT   3 aallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkq 43 
                        ++RYkeKrk+R+F K+irYesRKa+A+ R R+KGrF+k+
  PH01001639G0300 317 TVISRYKEKRKNRRFGKQIRYESRKARADGRLRIKGRFAKS 357
                      5689***********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003361.9E-103582IPR000315B-box-type zinc finger
PROSITE profilePS5011910.0253582IPR000315B-box-type zinc finger
CDDcd000211.29E-63982No hitNo description
PROSITE profilePS5101714.803315357IPR010402CCT domain
PfamPF062033.0E-16317357IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MAREEQQKLL ASGLVQGEAK EAMPSTNDDA AGVAVPQSPC DNCSGMPAVV YCRADSARLC  60
LPCDRHVHGA NAVSSSHARA PLCAVCRAAV AAFRRAARFL CSNCDFEKHR DGAAQGEPLH  120
DRGTVEGYTG CPSLSELAAI LGVDECEKSA NEGWWSVWEE PQNWTSPGGE LNEEVLRQLG  180
ELAKSEGAAY VEAEPGSDQL PSGASSECAI GYGDFGAFGT EASHEAASMA VPSCEHEAWI  240
AIDCNESTDC EAEVAHEQIP VSSAAEPCLS SFVEISEIFP SMSRSSSINQ DPATAAAPTQ  300
ALPKKGGYDI PYPDRGTVIS RYKEKRKNRR FGKQIRYESR KARADGRLRI KGRFAKSD*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01001639G0300
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025799929.11e-122zinc finger protein CONSTANS-LIKE 13-like
TrEMBLA0A0A9DY161e-132A0A0A9DY16_ARUDO; Uncharacterized protein
STRINGOPUNC07G24010.11e-127(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP37592222
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47890.11e-36B-box type zinc finger protein with CCT domain