PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01001619G0180
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family NAC
Protein Properties Length: 471aa    MW: 52317.5 Da    PI: 6.7295
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01001619G0180genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM53.48.8e-17251662128
              NAM   2 ppGfrFhPtdeelvveyLkkkvegkk....leleevikevdiykvePwdLp.kkvka..eekew.yfFskrdkkya.......tgkrknratks 80 
                       +Gf F+P    lv ++L++k+   +    l  + v + vd+y + P+ Lp ++++     k w +fF++r  +++       ++    r +  
  PH01001619G0180  25 SVGFNFQPDGRCLVANFLAPKALCGRvpdlLVQDAVADGVDVYGTLPEALPfHRCNRseYGKVWgHFFTTRPAAASasgggggSDGGDVRDALG 118
                      68*******************9999977743333458889***********64444311345789****9999887555544333367777889 PP

              NAM  81 gyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                      g W++ g +k+   ++g +v  +  ++fy+gr+   + t W m+e+r+
  PH01001619G0180 119 GCWRQYGGEKAYAGEDGDVVAFRSRFAFYDGREDGDKPTPWRMKEFRI 166
                      **********************************************97 PP
2NAM25.43.8e-0830842114124
              NAM  14 lvveyLkkkvegkk.....leleevikevdiykvePwdLp.k..kvkaeekew.yfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kg 97 
                      +v +yL++k+ + +     ++  +v++ vd+++v P  Lp +  + ++  + w yfF+ +             +  g W   g dk+     +g
  PH01001619G0180 308 VVAYYLAPKALRGElpddvIPG-DVMDGVDVFSVSPDALPfQrrHSREYGEVWgYFFAAQPP-----------APGGCWLRHGADKAYSGGdGG 389
                      789******9999955544444.689**************5432222233467899988755...........358**********99887688 PP

              NAM  98 elvglkktLvfy.....kgrapkgektdWvmh 124
                      e+v  ++ ++f+     +  +  g kt+W+m+
  PH01001619G0180 390 EVVVFRRRFAFHvtwrgRDGRVVGAKTQWMME 421
                      899*********9884433445688****995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.12E-1619192IPR003441NAC domain
PROSITE profilePS5100521.14524193IPR003441NAC domain
PfamPF023658.1E-926166IPR003441NAC domain
PROSITE profilePS510057.749295442IPR003441NAC domain
SuperFamilySSF1019411.26E-11308421IPR003441NAC domain
PfamPF023652.0E-4308421IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 471 aa     Download sequence    Send to blast
MAQQPQASLD IPPAQKPLRY MSELSVGFNF QPDGRCLVAN FLAPKALCGR VPDLLVQDAV  60
ADGVDVYGTL PEALPFHRCN RSEYGKVWGH FFTTRPAAAS ASGGGGGSDG GDVRDALGGC  120
WRQYGGEKAY AGEDGDVVAF RSRFAFYDGR EDGDKPTPWR MKEFRINEGA AAFRGVAFHP  180
IAKGLVVWKV YNEVEIPEES PADYSSSEDE AEEMVDDPVD VADVAAAYLH MIQQQQKVHQ  240
GLFLSSKSFE NIQFAICTRL LEPLLPSHQT PKGIPRLLRF ETLSWQWRLR PCRMCRWPTP  300
SRAKGHVVVA YYLAPKALRG ELPDDVIPGD VMDGVDVFSV SPDALPFQRR HSREYGEVWG  360
YFFAAQPPAP GGCWLRHGAD KAYSGGDGGE VVVFRRRFAF HVTWRGRDGR VVGAKTQWMM  420
EYLLDLILDL NLMIKTSRIV YVVIATHNSI CKCGSVPDDD AIVRRRIDLK *
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01001619G0180
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020172477.16e-67NAC transcription factor NAM-1-like
TrEMBLA0A3B6B1Q13e-70A0A3B6B1Q1_WHEAT; Uncharacterized protein
STRINGEMT033502e-66(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP128912231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69490.12e-06NAC-like, activated by AP3/PI