PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PH01001618G0390

Organism

Phyllostachys heterocycla

Taxonomic ID

38705

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys

Family

NAC

Protein Properties

Length: 293aa MW: 32630.6 Da PI: 7.1709

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PH01001618G0390	genome	ICBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	161.7	2.8e-50	10	141	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 lppGfrF P+deelv++yL++kv ++++ + + evd++ +ePw+Lp +k +++ewyfFs rd+kyatg r+nratksgyWkatgkd+ ++ PH01001618G0390 10 LPPGFRFYPSDEELVCHYLHNKVVNERFAGAGGtMVEVDLHIHEPWELPDVAKLSTNEWYFFSFRDRKYATGLRTNRATKSGYWKATGKDRIIH 103 79***********************7776555***********87788999********************************9 PP NAM 94 sk...kgelvglkktLvfykgrapkgektdWvmheyrl 128 + +++ vg++ktLvfy+grap+g kt+Wvmhe+r+ PH01001618G0390 104 NPkqaGRAIVGMRKTLVFYRGRAPNGIKTSWVMHEFRM 141 986666667*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	3.53E-59	7	160	IPR003441	NAC domain
PROSITE profile	PS51005	56.398	10	160	IPR003441	NAC domain
Pfam	PF02365	8.0E-28	11	141	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 293 aa Download sequence Send to blast
MGLRDIELTL PPGFRFYPSD EELVCHYLHN KVVNERFAGA GGTMVEVDLH IHEPWELPDV 60 AKLSTNEWYF FSFRDRKYAT GLRTNRATKS GYWKATGKDR IIHNPKQAGR AIVGMRKTLV 120 FYRGRAPNGI KTSWVMHEFR MENPHTPPKE DWVLCRVSHK KKADTMEYAM DSEQGILMAR 180 SASTVKGSNV SSSSHDPDYS PPFPSIGGHH YQLPSSDHHH GGVGSHLNDF PNTALLNYNS 240 IFDFNQHLDG GGAVVGAAAA GSRDHGGDQC AGGVLMELGL EEHYNYNSLM QM*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-48	1	163	4	168	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-48	1	163	4	168	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-48	1	163	4	168	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-48	1	163	4	168	NO APICAL MERISTEM PROTEIN
4dul_A	2e-48	1	163	4	168	NAC domain-containing protein 19
4dul_B	2e-48	1	163	4	168	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269\|PubMed:27021284}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PH01001618G0390

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by the microRNA miR164. {ECO:0000269\|PubMed:15294871, ECO:0000269\|PubMed:17098808}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK364002	1e-156	AK364002.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2020L05.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025824302.1	1e-155	protein CUP-SHAPED COTYLEDON 3-like
Swissprot	Q9FLJ2	2e-60	NC100_ARATH; NAC domain-containing protein 100
TrEMBL	A0A2S3GUT5	1e-153	A0A2S3GUT5_9POAL; Uncharacterized protein
TrEMBL	A0A2T7FDK0	1e-153	A0A2T7FDK0_9POAL; Uncharacterized protein
STRING	Pavir.Aa00144.1.p	1e-153	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP697	38	166

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G28530.1	4e-80	NAC domain containing protein 74

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]