PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PH01001609G0410 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
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Family | ERF | ||||||||
Protein Properties | Length: 174aa MW: 18527 Da PI: 9.8362 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 61.1 | 2.5e-19 | 25 | 74 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr ++ +gr++AeIrd ++ ++r++lg+++t+ eAa a+++a+ +l+g PH01001609G0410 25 HYRGVRKRP-WGRYAAEIRDpWK----KTRVWLGTYDTPVEAALAYDRAAVALRG 74 7********.**********883....5************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 3.99E-30 | 24 | 81 | No hit | No description |
SuperFamily | SSF54171 | 8.5E-22 | 25 | 82 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 3.8E-30 | 25 | 82 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.9E-34 | 25 | 88 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 21.549 | 25 | 82 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.5E-12 | 25 | 74 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 9.0E-10 | 26 | 37 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 9.0E-10 | 48 | 64 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 174 aa Download sequence Send to blast |
MRGDQGSGCG GGGERAGGGG RVEAHYRGVR KRPWGRYAAE IRDPWKKTRV WLGTYDTPVE 60 AALAYDRAAV ALRGSKARTN FGSDHSRGHL PHLQPCLPPR PAHAPSPFGG LDVSHPSPWH 120 FIYCPATLQV MAPPGPVAGE FAASLPSTVL ELRTGPRSLP FDLNEPPSLL FGS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 9e-21 | 25 | 81 | 5 | 62 | ATERF1 |
3gcc_A | 9e-21 | 25 | 81 | 5 | 62 | ATERF1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00645 | PBM | Transfer from LOC_Os05g41760 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PH01001609G0410 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC108523 | 4e-84 | AC108523.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OJ1118_C04, complete sequence. | |||
GenBank | AK242393 | 4e-84 | AK242393.1 Oryza sativa Japonica Group cDNA, clone: J080064G22, full insert sequence. | |||
GenBank | AP014961 | 4e-84 | AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012613 | 4e-84 | CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence. | |||
GenBank | CT828880 | 4e-84 | CT828880.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN038E23, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001141110.1 | 6e-68 | uncharacterized protein LOC100273194 | ||||
TrEMBL | B4FTI2 | 1e-66 | B4FTI2_MAIZE; AP2-EREBP transcription factor | ||||
STRING | GRMZM2G066158_P01 | 2e-67 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP103 | 37 | 465 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G28360.1 | 1e-23 | ERF domain protein 12 |