PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01001584G0350
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family GATA
Protein Properties Length: 345aa    MW: 37802.2 Da    PI: 4.4922
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01001584G0350genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA51.41.5e-16169203133
             GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkk 33 
                      C+nCgt++  Tp +Rrgp g++tLCnaCGl+++ k
  PH01001584G0350 169 CQNCGTSEkmTPAMRRGPAGPRTLCNACGLMWANK 203
                      ********************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5132011.876297IPR010399Tify domain
PfamPF062009.1E-86792IPR010399Tify domain
PROSITE profilePS510179.564137179IPR010402CCT domain
PfamPF062034.0E-10137168IPR010402CCT domain
SuperFamilySSF577161.66E-10161204No hitNo description
SMARTSM004018.8E-6163215IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.2E-13168203IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.94E-13168203No hitNo description
PfamPF003204.1E-14169204IPR000679Zinc finger, GATA-type
PROSITE patternPS003440169196IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MSDAAATQDA DAEMHHATAA AAADDDDDDT EEQDEDEDDE EEEEEDPPLA EEPPAPAPVT  60
ALPGSLNQLT LLFQGEVYVF ESVTPEKLKS VFQVQTVLLL LGSGEMPPGS AGMVLPNQHE  120
NRGYDDILRR TDIPAKRVAS LIRFREKRKE RNFDKKIRYA VRKEVALRCQ NCGTSEKMTP  180
AMRRGPAGPR TLCNACGLMW ANKFLPYYFL WAWRKLFVDE QYTHEQYYHA RDIIPLSVKQ  240
LVLELQHRAT NSSDRGTLRS CPKAKVEVPM VAIEQSNAAV SQSQSGTDNK ALVAPNNDNV  300
AASNGEAVIQ ANDELKLCID FASMGDSGPA NSAAIGGAPK AQPE*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250|UniProtKB:Q8LAU9}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01001584G0350
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9637547e-66EU963754.1 Zea mays clone 272371 GATA transcription factor 25 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024313633.11e-104GATA transcription factor 18 isoform X3
SwissprotA2XKR71e-103GAT18_ORYSI; GATA transcription factor 18
TrEMBLA0A446RQD81e-105A0A446RQD8_TRITD; Uncharacterized protein
STRINGTRIUR3_15386-P11e-106(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP34603773
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.28e-45ZIM-like 1