PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01001568G0220
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family RAV
Protein Properties Length: 358aa    MW: 38909.8 Da    PI: 9.7287
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01001568G0220genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP242.61.5e-1365113155
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                      s+ykGV   + +grW A+I++      r +r++lg+f  +e Aa+a++ a+++++g
  PH01001568G0220  65 SRYKGVVSQP-NGRWGAQIYE------RhARVWLGTFTDEEAAARAYDVAALRYRG 113
                      79****8888.8*********......44*************************98 PP
2B398.34.7e-31180271185
                      EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                      f+k+ tpsdv+k++rlv+pk++ae+h       +  + +s+ l +ed +g++W+++++y+++s++yvltkGW++Fv+++gL++gD++vF+++
  PH01001568G0220 180 FEKAVTPSDVGKLNRLVVPKQHAEKHfplkrvpDAATGKSVLLNFEDGEGKVWRFRYSYWNSSQSYVLTKGWSRFVREKGLQAGDTIVFSRS 271
                      89***************************9999777789**************************************************954 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008475.4E-865113IPR001471AP2/ERF domain
SuperFamilySSF541713.07E-1765121IPR016177DNA-binding domain
CDDcd000181.71E-1365121No hitNo description
SMARTSM003801.2E-2366127IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.3E-2166121IPR001471AP2/ERF domain
PROSITE profilePS5103221.6866121IPR001471AP2/ERF domain
PRINTSPR003679.9E-56778IPR001471AP2/ERF domain
PRINTSPR003679.9E-587103IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.101.3E-38174286IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.62E-30176274IPR015300DNA-binding pseudobarrel domain
CDDcd100171.71E-30178271No hitNo description
PfamPF023623.0E-28180271IPR003340B3 DNA binding domain
PROSITE profilePS5086314.269180287IPR003340B3 DNA binding domain
SMARTSM010195.8E-22180286IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MGVESLRSTA EYSSHSSGAS TATTESGAAE LQPAAPTLPV ADVVVSPADE VVTSRPASAA  60
QQPSSRYKGV VSQPNGRWGA QIYERHARVW LGTFTDEEAA ARAYDVAALR YRGRDAATNF  120
PGTAASGAEL TFLAAHSKAE IVDMLRKHTY SDELRQGLRR GRGMGARAQP TPSWSRAPLF  180
EKAVTPSDVG KLNRLVVPKQ HAEKHFPLKR VPDAATGKSV LLNFEDGEGK VWRFRYSYWN  240
SSQSYVLTKG WSRFVREKGL QAGDTIVFSR SAFGPDKQLF IDCKKNKMTC TDGSDAPPVE  300
KPKEPRVVRL FGVDIAGDEC QKGGRAVEMA LEQGQEFFKR QCVGAHHHSP ALGAFVL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A5e-4817929413125DNA-binding protein RAV1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01001568G0220
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP1006860.0FP100686.1 Phyllostachys edulis cDNA clone: bphyem201a06, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020191173.11e-174AP2/ERF and B3 domain-containing protein Os01g0141000-like isoform X1
RefseqXP_020200371.11e-174AP2/ERF and B3 domain-containing protein Os01g0141000-like isoform X1
RefseqXP_020201146.11e-174AP2/ERF and B3 domain-containing protein Os01g0141000-like isoform X1
SwissprotQ9AWS01e-158Y1410_ORYSJ; AP2/ERF and B3 domain-containing protein Os01g0141000
TrEMBLA0A3B6GLZ81e-173A0A3B6GLZ8_WHEAT; Uncharacterized protein
TrEMBLA0A453DVG91e-173A0A453DVG9_AEGTS; Uncharacterized protein
STRINGPavir.Eb00702.1.p1e-175(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP45638203
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68840.28e-85related to ABI3/VP1 2
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]