PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PH01001565G0340 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
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Family | MYB | ||||||||
Protein Properties | Length: 678aa MW: 76917.3 Da PI: 7.1963 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 43.7 | 6.3e-14 | 8 | 53 | 2 | 48 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 g W Ede+l+ av ++G+++W++I++ + ++++kqck rw+ +l PH01001565G0340 8 GVWKNTEDEILKAAVMKYGKNQWARISSLLV-RKSAKQCKARWYEWL 53 78*****************************.************986 PP | |||||||
2 | Myb_DNA-binding | 32.8 | 1.6e-10 | 103 | 145 | 3 | 48 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 WT eEde+l+++ k++++ W+tIa +g Rt+ qc +r+ k+l PH01001565G0340 103 EWTREEDEKLLHLAKLMPTQ-WRTIAPIVG--RTPSQCLERYEKLL 145 7*****************99.********8..**********9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 22.008 | 2 | 57 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.87E-13 | 4 | 60 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.1E-16 | 5 | 59 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 7.0E-15 | 6 | 55 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.4E-12 | 8 | 53 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 6.45E-12 | 10 | 53 | No hit | No description |
PROSITE profile | PS51294 | 15.494 | 96 | 149 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.79E-11 | 97 | 150 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 6.9E-11 | 98 | 146 | IPR009057 | Homeodomain-like |
CDD | cd11659 | 2.85E-27 | 99 | 148 | No hit | No description |
SMART | SM00717 | 2.7E-11 | 100 | 147 | IPR001005 | SANT/Myb domain |
Pfam | PF13921 | 2.0E-9 | 104 | 152 | No hit | No description |
Pfam | PF11831 | 2.5E-49 | 448 | 675 | IPR021786 | Pre-mRNA splicing factor component Cdc5p/Cef1 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 678 aa Download sequence Send to blast |
MRIMIKGGVW KNTEDEILKA AVMKYGKNQW ARISSLLVRK SAKQCKARWY EWLDPSIKKV 60 NHWLSLSADF VCSLPLQSIK NLLVNEGSYL FENVSWSNID ETEWTREEDE KLLHLAKLMP 120 TQWRTIAPIV GRTPSQCLER YEKLLDAACA KDENYEPNDD PRKLRPGEID PNPESKPARP 180 DPVDMDEDEK EMLSEARARL ANTRGKKAKR KAREKQLEEA RRLASLQKRR ELKAAGIDTR 240 HRKRKRKGID YNAEIPFEKR PPPGFYDTVG EDRPLEHVQF PTTIEELEGK RRVDIEAQLR 300 KQDIARNKIL QRQDAPAAIM QANKLNDPEA VTKRSKLMLP PPQISDHELE EIAKMGNAGD 360 PALAEELGEG STATRTLLAS YSQTPRLGMT PLRTPQRTPA GKGDAIMMEA ENLARLRESQ 420 TPLLGGDNPE LHPSDFSGVT PRKKEILTPN PMATPLASPG PGVTPRIGMT PSRDGNSFGL 480 TPKGTPFRDE LRINEEMEMQ DSAQLELRRQ AELRKSLRSG FASISQPKNE YQIVMPPITE 540 EETEEAEEKI EEDMSDKLGR ERAEEQARQE ALLRKRSKVL QRSLPRPPAG SVEILRQSLI 600 KGGESRSRST FVPPTSLEQA DELINEELLR LLEHDNAKYP LDEKTQREKK KGNKRQANGA 660 AFVPEIEDFD VDELKEV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5mqf_L | 0.0 | 2 | 642 | 3 | 593 | Cell division cycle 5-like protein |
5xjc_L | 0.0 | 2 | 642 | 3 | 593 | Cell division cycle 5-like protein |
5yzg_L | 0.0 | 2 | 642 | 3 | 593 | Cell division cycle 5-like protein |
5z56_L | 0.0 | 2 | 642 | 3 | 593 | Cell division cycle 5-like protein |
5z57_L | 0.0 | 2 | 642 | 3 | 593 | Cell division cycle 5-like protein |
5z58_L | 0.0 | 2 | 642 | 3 | 593 | Cell division cycle 5-like protein |
6ff4_L | 0.0 | 2 | 642 | 3 | 593 | Cell division cycle 5-like protein |
6ff7_L | 0.0 | 2 | 642 | 3 | 593 | Cell division cycle 5-like protein |
6icz_L | 0.0 | 2 | 642 | 3 | 593 | Cell division cycle 5-like protein |
6id0_L | 0.0 | 2 | 642 | 3 | 593 | Cell division cycle 5-like protein |
6id1_L | 0.0 | 2 | 642 | 3 | 593 | Cell division cycle 5-like protein |
6qdv_O | 0.0 | 2 | 642 | 3 | 593 | Cell division cycle 5-like protein |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 227 | 246 | KRRELKAAGIDTRHRKRKRK |
2 | 241 | 246 | RKRKRK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Component of the MAC complex that probably regulates defense responses through transcriptional control and thereby is essential for plant innate immunity. Possesses a sequence specific DNA sequence 'CTCAGCG' binding activity. Involved in mRNA splicing and cell cycle control. May also play a role in the response to DNA damage. {ECO:0000250|UniProtKB:Q99459, ECO:0000269|PubMed:17298883, ECO:0000269|PubMed:17575050, ECO:0000269|PubMed:8917598}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PH01001565G0340 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AL662963 | 0.0 | AL662963.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0020I02, complete sequence. | |||
GenBank | AP014960 | 0.0 | AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020198485.1 | 0.0 | cell division cycle 5-like protein isoform X1 | ||||
Refseq | XP_020198486.1 | 0.0 | cell division cycle 5-like protein isoform X2 | ||||
Swissprot | P92948 | 0.0 | CDC5L_ARATH; Cell division cycle 5-like protein | ||||
TrEMBL | A0A3L6T5B9 | 0.0 | A0A3L6T5B9_PANMI; Cell division cycle 5-like protein | ||||
STRING | ONIVA04G06780.1 | 0.0 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4416 | 35 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G09770.1 | 0.0 | cell division cycle 5 |
Publications ? help Back to Top | |||
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