PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01001558G0360
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family G2-like
Protein Properties Length: 350aa    MW: 38491.7 Da    PI: 7.4809
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01001558G0360genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like96.71.7e-3067120255
          G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                      prlrWtpeLH +Fv+ ve+LGG+++AtPk +l+lm+v gL++ hvkSHLQ+YR+
  PH01001558G0360  67 PRLRWTPELHLCFVRTVERLGGQDRATPKLVLQLMNVRGLSIGHVKSHLQMYRS 120
                      9****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.608.7E-2963121IPR009057Homeodomain-like
PROSITE profilePS5129412.10563123IPR017930Myb domain
SuperFamilySSF466891.0E-1464121IPR009057Homeodomain-like
TIGRFAMsTIGR015572.2E-2266122IPR006447Myb domain, plants
PfamPF002493.6E-868119IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MESSKGFESS TELPSGAEVD EDADGGGAPN DGSSASNNST VEEEAGDIRK TGASSSSVRP  60
YVRSKNPRLR WTPELHLCFV RTVERLGGQD RATPKLVLQL MNVRGLSIGH VKSHLQMYRS  120
KKIDDSGQVI GGSWRDRHLQ EGGQVHNIGH LSLPHPFHHR QSGSGTILSR FGTAWSPWSC  180
HGSYLLHGHH FLGSKPYYST TDEAEAFFRI RAQFVARAAT NNPALIQGCS SRNDHTMNHQ  240
RRLLQATMCN NNEDNNRAPL DLDLDLSLDI GPRREKRKRG CSYGKEDDDR IDGDEEVDST  300
ATRLSLSLLS APPPRMSTTS SAVDTLDVNL IKEKAHATRT STLDLTIRV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A3e-1768122357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B3e-1768122357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C3e-1768122357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D3e-1768122357Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00297DAPTransfer from AT2G38300Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01001558G0360
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0936680.0FP093668.1 Phyllostachys edulis cDNA clone: bphyem204i06, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025798662.11e-110putative Myb family transcription factor At1g14600
TrEMBLA0A1E5VA201e-113A0A1E5VA20_9POAL; Uncharacterized protein
STRINGSb05g000480.11e-110(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44083671
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38300.16e-42G2-like family protein