PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PH01001557G0370 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
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Family | GATA | ||||||||
Protein Properties | Length: 198aa MW: 20747.4 Da PI: 9.0526 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 53.2 | 4.1e-17 | 90 | 126 | 1 | 35 |
GATA 1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 C+nCgt++ Tp +Rrgp g++tLCnaCGl+++ kg+ PH01001557G0370 90 CQNCGTSEkmTPAMRRGPAGPRTLCNACGLMWANKGT 126 **********************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00401 | 4.4E-8 | 84 | 137 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 2.28E-11 | 88 | 134 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 3.7E-14 | 89 | 128 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 3.02E-15 | 89 | 138 | No hit | No description |
Pfam | PF00320 | 1.1E-14 | 90 | 126 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 90 | 117 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 198 aa Download sequence Send to blast |
MTGLGMADGG SYPQEAAVAD LQQDQAATRS NSGGYPSPLH LLSTLSPSIY GFAPFWGSDR 60 VPQRIRSRAN PESDRVIQIG VRRWLPRIRC QNCGTSEKMT PAMRRGPAGP RTLCNACGLM 120 WANKGTLRSC PKANVEAPLV TIERSNAAVS QSKSGTDNKA LVAPNNDIVA ASNVEAMGES 180 GPANAAAIEG APKAQLE* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250|UniProtKB:Q8LAU9}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PH01001557G0370 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By drought and salt stresses. {ECO:0000269|PubMed:19618278}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK354746 | 2e-67 | AK354746.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv1010K24. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024313633.1 | 2e-51 | GATA transcription factor 18 isoform X3 | ||||
Swissprot | Q10F25 | 3e-45 | GAT18_ORYSJ; GATA transcription factor 18 | ||||
TrEMBL | A0A3B6HYZ3 | 1e-47 | A0A3B6HYZ3_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A446RQE0 | 2e-46 | A0A446RQE0_TRITD; Uncharacterized protein | ||||
STRING | TRIUR3_15386-P1 | 3e-46 | (Triticum urartu) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3460 | 37 | 73 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G21175.2 | 2e-21 | ZIM-like 1 |
Publications ? help Back to Top | |||
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