PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01001554G0250
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family bZIP
Protein Properties Length: 329aa    MW: 35011.7 Da    PI: 9.8577
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01001554G0250genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_143.28.3e-14261311555
                      CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
           bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkke 55 
                      +r+rr++kNRe+A+rsR+RK+a++ eLe +v++L++ Nk+L  +  e+ ++
  PH01001554G0250 261 RRQRRMIKNRESASRSRARKQAYTMELEAEVQKLKELNKELERKQAEIMEM 311
                      79************************************9998777776665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003385.8E-10257315IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.795259310IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1702.1E-13261310No hitNo description
SuperFamilySSF579592.46E-10261309No hitNo description
PfamPF001707.9E-12261312IPR004827Basic-leucine zipper domain
CDDcd147072.15E-23261313No hitNo description
PROSITE patternPS000360264279IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009737Biological Processresponse to abscisic acid
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MEIKNGGSSS ERRAAVAEEA SLARQGSVYS LTFDEFQSAL GGVGGNGSGK DFGSMNMDEL  60
LRSIWTAEES QAMASASGSG VGAGEPPTPL QRQGSLTLPR TLSVKTVDEV WRSLMRDEPP  120
PPQRQATIGE MTLEEFLVRA GVVRENPTAA PPSMPPRPVP VAPKSSAFYG NFASANDAAS  180
AAALGFAPVG MADLALGNGL MPKAVGLGGS AMAVQTAVNQ LDSGGKGNGG LSSPTEPMPY  240
SFEGIVRGRR NGGGVEKVVE RRQRRMIKNR ESASRSRARK QAYTMELEAE VQKLKELNKE  300
LERKQAEIME MQKNEVPLFR RIPKLPHV*
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that mediates abscisic acid (ABA) signaling. Binds specifically to the ABA-responsive element (ABRE) of the EMP1 and RAB16A gene promoters. {ECO:0000269|PubMed:10611387}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00087SELEXTransfer from AT1G49720Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01001554G0250
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA). {ECO:0000269|PubMed:10611387}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015612550.11e-150bZIP transcription factor TRAB1-like
SwissprotQ6ZDF31e-112TRAB1_ORYSJ; bZIP transcription factor TRAB1
TrEMBLA0A0D9XEG61e-151A0A0D9XEG6_9ORYZ; Uncharacterized protein
STRINGLPERR09G09170.11e-152(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP70638147
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19290.31e-26ABRE binding factor 4
Publications ? help Back to Top
  1. Kagaya Y,Hobo T,Murata M,Ban A,Hattori T
    Abscisic acid-induced transcription is mediated by phosphorylation of an abscisic acid response element binding factor, TRAB1.
    Plant Cell, 2002. 14(12): p. 3177-89
    [PMID:12468735]
  2. Kobayashi Y, et al.
    Abscisic acid-activated SNRK2 protein kinases function in the gene-regulation pathway of ABA signal transduction by phosphorylating ABA response element-binding factors.
    Plant J., 2005. 44(6): p. 939-49
    [PMID:16359387]
  3. Kobayashi F,Maeta E,Terashima A,Takumi S
    Positive role of a wheat HvABI5 ortholog in abiotic stress response of seedlings.
    Physiol Plant, 2008. 134(1): p. 74-86
    [PMID:18433415]