PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PH01001551G0070 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
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Family | Nin-like | ||||||||
Protein Properties | Length: 201aa MW: 21883.8 Da PI: 8.3823 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 81.3 | 9.7e-26 | 9 | 59 | 2 | 52 |
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 + ++ l+ l++yF++++k AAk++gvc+T+LK iC q+GI+RWP+Rkik++ PH01001551G0070 9 QRNVCLSILQQYFAGSLKHAAKSIGVCPTTLKSICQQHGISRWPSRKIKKV 59 56888999*****************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51519 | 15.084 | 1 | 79 | IPR003035 | RWP-RK domain |
Pfam | PF02042 | 1.4E-23 | 11 | 59 | IPR003035 | RWP-RK domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 201 aa Download sequence Send to blast |
MERENAAQQR NVCLSILQQY FAGSLKHAAK SIGVCPTTLK SICQQHGISR WPSRKIKKVN 60 RSLKEIQNVI SSVQGVEGVL KYDPATGCLV SSVSPSEEPS IMDVENKGSD PLPIESNFSH 120 LKFKPDCDAH QREHLGQDVL LKVQKGKISE IDLNLNHGGL FLNSHSARKS NSPLCQDASN 180 GSYVIKEMTN AATTDVDRGS * |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PH01001551G0070 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015616880.1 | 6e-86 | protein NLP2-like isoform X1 | ||||
Refseq | XP_015616881.1 | 6e-86 | protein NLP2-like isoform X1 | ||||
Swissprot | Q0JC27 | 2e-35 | NLP2_ORYSJ; Protein NLP2 | ||||
TrEMBL | A0A0E0BHI9 | 3e-85 | A0A0E0BHI9_9ORYZ; Uncharacterized protein | ||||
TrEMBL | A0A0E0BHJ0 | 3e-85 | A0A0E0BHJ0_9ORYZ; Uncharacterized protein | ||||
STRING | OGLUM11G08660.3 | 5e-86 | (Oryza glumipatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3670 | 35 | 73 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G59580.2 | 6e-37 | Nin-like family protein |
Publications ? help Back to Top | |||
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