PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01001550G0050
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family HD-ZIP
Protein Properties Length: 300aa    MW: 32209.1 Da    PI: 9.1079
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01001550G0050genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.93.6e-18131185256
                      T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
         Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                      rk+ +++keq   Lee F+++++++ +++  LAk+l+L  rqV vWFqNrRa+ k
  PH01001550G0050 131 RKKLRLSKEQSAFLEESFKEHSTLNPKQKVALAKQLNLRPRQVEVWFQNRRARTK 185
                      788899***********************************************98 PP
2HD-ZIP_I/II128.82.2e-41131221192
      HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                      +kk+rlskeq+++LEesF+e+++L+p++Kv+la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+ke +eLr +lk
  PH01001550G0050 131 RKKLRLSKEQSAFLEESFKEHSTLNPKQKVALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLHKELAELR-ALK 221
                      69*************************************************************************************9.665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.2E-18114181IPR009057Homeodomain-like
SuperFamilySSF466891.45E-18116188IPR009057Homeodomain-like
PROSITE profilePS5007117.167127187IPR001356Homeobox domain
SMARTSM003896.3E-16129191IPR001356Homeobox domain
PfamPF000461.3E-15131185IPR001356Homeobox domain
CDDcd000861.46E-16131188No hitNo description
PROSITE patternPS000270162185IPR017970Homeobox, conserved site
SMARTSM003402.1E-25187230IPR003106Leucine zipper, homeobox-associated
PfamPF021838.1E-11187221IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MELGLSLGEA DAVRPELVLG LGVGVGAGRG EEGERGRREA AVGARRWAAA ASPEPSGVRR  60
RRRAAGMENE EDQQGDPAAV TLSSSPNDSA GSFPLDLSAH SRRRPAEVAT QAGGERSSSR  120
ASDDDEGASA RKKLRLSKEQ SAFLEESFKE HSTLNPKQKV ALAKQLNLRP RQVEVWFQNR  180
RARTKLKQTE VDCEYLKRCC ETLTEENRRL HKELAELRAL KTAHPFYMHL PATTLSMCPS  240
CERIASNPAT ASTSTPAAAA SNTGVAAPEN RPSSFAALFA APRSFPPAAQ PQLPASNCL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1179187RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01001550G0050
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0958960.0FP095896.1 Phyllostachys edulis cDNA clone: bphylf048g10, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012702116.11e-117homeobox-leucine zipper protein HOX27
SwissprotA2YW031e-110HOX27_ORYSI; Homeobox-leucine zipper protein HOX27
TrEMBLA0A0D9X8P61e-125A0A0D9X8P6_9ORYZ; Uncharacterized protein
STRINGLPERR08G14440.11e-126(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP52093363
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06710.12e-69homeobox from Arabidopsis thaliana