PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01001548G0400
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family MYB
Protein Properties Length: 287aa    MW: 30960.9 Da    PI: 8.1737
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01001548G0400genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.94.1e-171462148
                     TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                     rg+W++eEde l  +v+ +G+g +W + +++ g++R++k+c++rw++yl
  PH01001548G0400 14 RGPWSPEEDEMLRSYVRSHGTGgNWIALPQKAGLNRCGKSCRLRWLNYL 62
                     89*********************************************97 PP
2Myb_DNA-binding40.27.6e-1371111446
                      S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                       T++Ed +++ + +  G++ W+ Ia++m+ gRt++++k++w++
  PH01001548G0400  71 YTEQEDRIIYSLYNSIGSR-WSIIASKMP-GRTDNDVKNYWNT 111
                      69*****************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129421.679966IPR017930Myb domain
SuperFamilySSF466892.08E-2811109IPR009057Homeodomain-like
SMARTSM007171.8E-121364IPR001005SANT/Myb domain
PfamPF002494.6E-161462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.6E-241569IPR009057Homeodomain-like
CDDcd001671.39E-91662No hitNo description
SMARTSM007172.4E-1267115IPR001005SANT/Myb domain
PROSITE profilePS5129414.91467117IPR017930Myb domain
PfamPF002491.6E-1169111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.9E-2270117IPR009057Homeodomain-like
CDDcd001671.34E-971113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
MGRAPCCDKA SVKRGPWSPE EDEMLRSYVR SHGTGGNWIA LPQKAGLNRC GKSCRLRWLN  60
YLRPDIKHGG YTEQEDRIIY SLYNSIGSRW SIIASKMPGR TDNDVKNYWN TKLKKKVIAM  120
HQQQQHHHHH GACGRGHARG SLVAPPPAAP QSQCASMHPS PASAASSAVT TASGDACSFG  180
AMYSPSQPPL GHYNAPVPLT EFSPVPTPAA ANSWANAMAL DDMFLPELVG GGEFPHGDIF  240
GGFGQLLQDR SSLQELSACY FPDGQAEMWS AADHVKPPAG LCHSLT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-27141177108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01001548G0400
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHF6794311e-150HF679431.1 Saccharum hybrid cultivar Co 86032 mRNA for ScMYB25 protein.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020179126.11e-145myb-related protein Myb4-like
TrEMBLM0YNG11e-150M0YNG1_HORVV; Uncharacterized protein
STRINGMLOC_71129.11e-151(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP13538412
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57620.18e-70myb domain protein 36