PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PH01001541G0130 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
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Family | MYB | ||||||||
Protein Properties | Length: 295aa MW: 32833 Da PI: 7.6423 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 52.1 | 1.5e-16 | 14 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEd +l++ ++++G+g +W + +++ g++R++k+c++rw++yl PH01001541G0130 14 KGPWSPEEDAKLKEFIEKHGTGgNWIALPQKAGLRRCGKSCRLRWLNYL 62 79*********************************************97 PP | |||||||
2 | Myb_DNA-binding | 34.5 | 4.8e-11 | 69 | 111 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g +T+ Ed ++ + G++ W+ Ia+ ++ gRt++++k++w++ PH01001541G0130 69 GEFTEHEDRIICGMYASIGSR-WSIIASQLP-GRTDNDIKNYWNT 111 78*******************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 21.884 | 9 | 66 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.3E-27 | 11 | 109 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 9.4E-13 | 13 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 8.3E-16 | 14 | 62 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.0E-24 | 15 | 69 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.83E-10 | 16 | 62 | No hit | No description |
SMART | SM00717 | 1.9E-10 | 67 | 115 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 15.376 | 67 | 117 | IPR017930 | Myb domain |
Pfam | PF00249 | 3.8E-9 | 69 | 111 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.9E-22 | 70 | 117 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 295 aa Download sequence Send to blast |
MGRAPCCDKN NVKKGPWSPE EDAKLKEFIE KHGTGGNWIA LPQKAGLRRC GKSCRLRWLN 60 YLRPNIKHGE FTEHEDRIIC GMYASIGSRW SIIASQLPGR TDNDIKNYWN TKLKKKLLVS 120 TAGAPLPRPP RQHHRPVLLP HSSSLPHPSY NGFFTGAGSI QEPFIPTLTL PTTQDYMLSS 180 GSLTMTNASA LLHAQGAAHQ LQVEETSSMI VFGTDQPSCS SSDGTHNQFG YHGKELSFDG 240 YSYGYNGIIE QDHKLFQQEQ AQLDYNYEEI KQLLMTTSAA GLHDQEAMEG LIGSQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-26 | 14 | 117 | 7 | 108 | B-MYB |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PH01001541G0130 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FP096205 | 0.0 | FP096205.1 Phyllostachys edulis cDNA clone: bphylf043l07, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004975125.1 | 1e-140 | transcription factor RAX2 | ||||
TrEMBL | A0A3L6PSV4 | 1e-145 | A0A3L6PSV4_PANMI; Transcription factor RAX2-like | ||||
STRING | Si010627m | 1e-139 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP135 | 38 | 412 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G57620.1 | 1e-75 | myb domain protein 36 |