PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PH01001539G0060

Organism

Phyllostachys heterocycla

Taxonomic ID

38705

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys

Family

bZIP

Protein Properties

Length: 287aa MW: 30648.9 Da PI: 4.7501

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PH01001539G0060	genome	ICBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	29.9	1.2e-09	129	172	7	50
HHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 7 errkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkele 50 ++ ++NR +A +sR+RKk++++ Le k+k Leae ++L l+ PH01001539G0060 129 QKAQIRNRDSAMKSRERKKMYVKDLEMKSKYLEAECRRLSYALQ 172 56679******************************999986665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00170	9.4E-8	129	179	IPR004827	Basic-leucine zipper domain
CDD	cd14704	2.09E-13	129	179	No hit	No description
Gene3D	G3DSA:1.20.5.170	1.3E-10	129	186	No hit	No description
PROSITE pattern	PS00036	0	130	145	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	4.31E-10	130	185	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010200	Biological Process	response to chitin
GO:0030968	Biological Process	endoplasmic reticulum unfolded protein response
GO:0005634	Cellular Component	nucleus
GO:0005789	Cellular Component	endoplasmic reticulum membrane
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 287 aa Download sequence Send to blast
MAAGAAGAGG DHDLPLEDVD ALLASFSGDP AVFVPPPEPV IPGESPGEGL WEIERFLMED 60 VDEAAVADGA DEFLDAVLAG DEEGSPVGGG STDGASEKED EEAVGVGVGV DGDDPNSKKK 120 RRRIGFVAQK AQIRNRDSAM KSRERKKMYV KDLEMKSKYL EAECRRLSYA LQCCAAENMA 180 LRQCLLKDRP VSAPTAMQES AVLTGTLPLV SLLWLVSIVC LFLTPGLPNR SPVAPSSLER 240 DLVMVARTTN GDEPVTLELI RHGRRCKGTR ARIKLPRLPW HGAAAC*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	117	122	KKKRRR
2	119	123	KRRRI

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in endoplasmic reticulum (ER) stress response (PubMed:21223397, PubMed:22050533, PubMed:22199238). Acts downstream of the ER stress sensors IRE1, BZIP39 and BZIP60 to activate BiP chaperone genes (PubMed:22050533, PubMed:22199238). {ECO:0000269\|PubMed:21223397, ECO:0000269\|PubMed:22050533, ECO:0000269\|PubMed:22199238}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00019	PBM	Transfer from AT1G42990	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PH01001539G0060

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By dithiothreitol-induced endoplasmic reticulum (ER) stress response (PubMed:22050533, PubMed:21223397). Induced by salt stress (PubMed:22050533). {ECO:0000269\|PubMed:21223397, ECO:0000269\|PubMed:22050533}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025803229.1	1e-106	bZIP transcription factor 50-like
Swissprot	Q69XV0	5e-88	BZP50_ORYSJ; bZIP transcription factor 50
TrEMBL	A0A2S3GM81	1e-105	A0A2S3GM81_9POAL; Uncharacterized protein
STRING	Pavir.J35667.1.p	1e-107	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6934	37	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G42990.1	3e-14	basic region/leucine zipper motif 60

Publications ? help Back to Top
Wakasa Y, et al. Expression of ER quality control-related genes in response to changes in BiP1 levels in developing rice endosperm. Plant J., 2011. 65(5): p. 675-89 [PMID:21223397] Lu SJ, et al. Conservation of IRE1-regulated bZIP74 mRNA unconventional splicing in rice (Oryza sativa L.) involved in ER stress responses. Mol Plant, 2012. 5(2): p. 504-14 [PMID:22199238]