PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01001535G0300
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family G2-like
Protein Properties Length: 343aa    MW: 37224 Da    PI: 8.3235
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01001535G0300genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like100.51.1e-31219274156
          G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                      k+r++W+peLH++Fv a++qLGG+++AtPk+i+e+mkv+gLt+++vkSHLQkYRl+
  PH01001535G0300 219 KTRRCWSPELHRQFVAALRQLGGPQVATPKQIREVMKVDGLTNDEVKSHLQKYRLH 274
                      68****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.388216276IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.4E-28217277IPR009057Homeodomain-like
SuperFamilySSF466891.79E-16217277IPR009057Homeodomain-like
TIGRFAMsTIGR015579.2E-26219274IPR006447Myb domain, plants
PfamPF002497.8E-7221272IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MGLDVGLNLK LFAAWSAGRM AAAAKEAPAV DACIKGLEEE RRKIEVFRRE LPLCVRLLAE  60
VIEVMKEEAG KRSGNGDADA KAEDGDKRKW MSTAQLWVDS RGSDADSEKE QESETTSPES  120
KLRGGEPVPL RTVGCGAPAL PPAPYFRRED KVASTLGLPG LPLMSPAVKR PLSPVTAGDD  180
HRHVVTARFA AAMPPSGPRI SLQTQTQTQQ LQQQQEARKT RRCWSPELHR QFVAALRQLG  240
GPQVATPKQI REVMKVDGLT NDEVKSHLQK YRLHNRRSPG AAPASQQIVL LGDLWVTQEE  300
SSSQSGSPQG PLQFSGSGVA VSVATVGDSY EEDDRSEGYS RK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A3e-14219272255Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B3e-14219272255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A3e-14219272255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C3e-14219272255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D3e-14219272255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F3e-14219272255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H3e-14219272255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J3e-14219272255Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01001535G0300
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010229377.11e-147transcription factor HHO5
TrEMBLI1GMZ11e-146I1GMZ1_BRADI; Uncharacterized protein
STRINGBRADI1G07630.11e-146(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP181737107
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03500.19e-42G2-like family protein