PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PH01001520G0040 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
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Family | TCP | ||||||||
Protein Properties | Length: 101aa MW: 10394.7 Da PI: 4.176 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 68.9 | 1.6e-21 | 2 | 49 | 28 | 74 |
TCP 28 caarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.e 74 +aar+F+L++eLG+ +d++tieWLl+qa+p+i+++tgt+ s++++ PH01001520G0040 2 VAARVFQLTRELGHRTDGETIEWLLRQAEPSIIAATGTGVSPEEAPpA 49 8*************************************8888844431 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51369 | 19.483 | 1 | 36 | IPR017887 | Transcription factor TCP subgroup |
Pfam | PF03634 | 2.9E-16 | 2 | 46 | IPR005333 | Transcription factor, TCP |
Sequence ? help Back to Top |
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Protein Sequence Length: 101 aa Download sequence Send to blast |
MVAARVFQLT RELGHRTDGE TIEWLLRQAE PSIIAATGTG VSPEEAPPAA VPVGSSSAGH 60 GVPFVPVPYY TALLMQPPNA DEPSMPPAAS ASITTAEENN * |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator. Binds the promoter core sequence 5'-GGNCC-3', especially at sites IIa (5'-GGGCCCAC-3') and IIb (5'-GGTCCCAC-3') (essential for meristematic tissue-specificity expression) of the PCNA gene promoter. {ECO:0000269|PubMed:12000681, ECO:0000269|PubMed:9338963}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PH01001520G0040 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FP092536 | 1e-128 | FP092536.1 Phyllostachys edulis cDNA clone: bphylf049m10, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003581062.1 | 5e-54 | transcription factor PCF1 | ||||
Swissprot | O23875 | 2e-39 | PCF1_ORYSJ; Transcription factor PCF1 | ||||
TrEMBL | A0A0Q3E6C7 | 1e-52 | A0A0Q3E6C7_BRADI; Uncharacterized protein | ||||
STRING | BRADI5G02880.1 | 2e-53 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP14172 | 26 | 27 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G23280.1 | 1e-19 | TCP family protein |