PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01001517G0230
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family bZIP
Protein Properties Length: 498aa    MW: 54550.8 Da    PI: 7.5237
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01001517G0230genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_166.83.8e-21399461163
                      XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
           bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                      e+elkr+rrkq+NRe+ArrsR+RK+ae+eeL++ +++L++eN +L++e+++++ke+++l s++
  PH01001517G0230 399 ERELKRQRRKQSNRESARRSRLRKQAECEELAQHAESLKQENASLRDEVNRIRKEYDELLSKN 461
                      89**********************************************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS513757.3111145IPR002885Pentatricopeptide repeat
PROSITE profilePS513759.124680IPR002885Pentatricopeptide repeat
PfamPF077771.1E-14130196IPR012900G-box binding protein, multifunctional mosaic region
PfamPF077777.3E-7205234IPR012900G-box binding protein, multifunctional mosaic region
PfamPF165964.4E-40276398No hitNo description
Gene3DG3DSA:1.20.5.1706.7E-16397458No hitNo description
SMARTSM003381.4E-20399463IPR004827Basic-leucine zipper domain
PfamPF001701.6E-19399461IPR004827Basic-leucine zipper domain
PROSITE profilePS5021713.208401464IPR004827Basic-leucine zipper domain
SuperFamilySSF579592.31E-10402458No hitNo description
CDDcd147023.71E-22404455No hitNo description
PROSITE patternPS000360406421IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 498 aa     Download sequence    Send to blast
MASLTDDLLA LVRSNDSAIN GFFKVRRTED GMSWLADMLK NNLKPREQTF NSLVESLTTS  60
GRVDDALLVL NTMFKIGFDL SSLACTILVD KLCTDNVSYS HGLEDILVLL YATSCVRWQW  120
SNRCPLSDQQ PPAASSAAAV TPAVYPDWTN FQAYPPIPTH GFFPSPMVSS PQGHPYMWGA  180
QVLVRLRCVP QKYWNFCRLR KRNKNQPMIP PYGTPPPPYV MYPPGGIYAH PSMPPGAHPF  240
TPYAMTSPNG NVDATGTAAA ATGGGEADGK SFEGKEKSPI KRSKGSLGSL NMITGKNSTE  300
HGKTSGASAN EAISQSGESG SESSSEGSEA NSQNDSQNKE SGQEQDEDIR SSQNGVSRSP  360
SQARLNQTMA IMPMPSSGPV PGPTTNLNIG MDYWASADER ELKRQRRKQS NRESARRSRL  420
RKQAECEELA QHAESLKQEN ASLRDEVNRI RKEYDELLSK NSSLKEKLGD KQHKTDEAAL  480
DNKLQHSGDD SQKKETN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1415421RRSRLRK
2415422RRSRLRKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in responses to fungal pathogen infection and abiotic stresses. {ECO:0000269|Ref.1}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00173DAPTransfer from AT1G32150Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01001517G0230
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced during incompatible interaction with the fungal pathogen Puccinia striiformis (Ref.1). Induced by abscisic acid (ABA), ethylene, cold stress, salt stress and wounding (Ref.1). {ECO:0000269|Ref.1}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0687661e-167AK068766.1 Oryza sativa Japonica Group cDNA clone:J013164D05, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003578746.10.0transcription factor HBP-1a
SwissprotB6E1071e-179BZP1B_WHEAT; bZIP transcription factor 1-B
TrEMBLI1ITE81e-179I1ITE8_BRADI; Uncharacterized protein
STRINGBRADI4G39630.11e-180(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP21473796
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32150.12e-75basic region/leucine zipper transcription factor 68
Publications ? help Back to Top
  1. Appels R, et al.
    Shifting the limits in wheat research and breeding using a fully annotated reference genome.
    Science, 2018.
    [PMID:30115783]