PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01001489G0540
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family ERF
Protein Properties Length: 228aa    MW: 23408.4 Da    PI: 9.9352
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01001489G0540genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP267.42.8e-213182156
              AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                     ++y+GVr ++ +gr++AeIrdp    k+ r++lg+f+taeeAa+a++aa+++++g+
  PH01001489G0540 31 PHYRGVRKRP-WGRYAAEIRDPA---KKSRVWLGTFDTAEEAARAYDAAAREYRGA 82
                     68********.**********83...36**************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.1E-143181IPR001471AP2/ERF domain
CDDcd000187.43E-193189No hitNo description
PROSITE profilePS5103224.2893289IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.3E-323289IPR001471AP2/ERF domain
SMARTSM003802.2E-363295IPR001471AP2/ERF domain
SuperFamilySSF541713.33E-233290IPR016177DNA-binding domain
PRINTSPR003671.4E-113344IPR001471AP2/ERF domain
PRINTSPR003671.4E-115571IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MAPRTSEKKI PPAAAAATGL ALGVGGGAGG PHYRGVRKRP WGRYAAEIRD PAKKSRVWLG  60
TFDTAEEAAR AYDAAAREYR GAKAKTNFPF PSMPPTAAAV TGGSRSSNSS TVESFGGDVQ  120
APMQALPLPP SLELDLFHRA AAAGAGAGGV RFPFNSYPVT HPYYFFGQAA AAAVASCHML  180
KVAPPVSVAQ SDSDSSSVVN LAPSPPAVSA KKAVAFDLDL NSLPPAEA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A8e-232890164ATERF1
3gcc_A8e-232890164ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01001489G0540
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0986660.0FP098666.1 Phyllostachys edulis cDNA clone: bphylf030g15, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001146973.14e-93uncharacterized LOC100280582
TrEMBLA0A0A9U7H81e-102A0A0A9U7H8_ARUDO; Uncharacterized protein
STRINGGRMZM2G174347_P012e-92(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38463174
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44210.19e-22erf domain protein 9