PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PH01001487G0410 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
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Family | ERF | ||||||||
Protein Properties | Length: 231aa MW: 24771.6 Da PI: 4.8133 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 58.6 | 1.6e-18 | 12 | 62 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 + ++GVr++ +g+WvAeIr+p + r +r +lg+f +a +Aa+a++aa+++l+g PH01001487G0410 12 CPFRGVRQRT-WGKWVAEIREP---N-RgARLWLGTFNSALDAARAYDAAARALYG 62 679****999.**********8...3.35***********************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 1.1E-31 | 13 | 76 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 20.56 | 13 | 70 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.11E-19 | 14 | 70 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 5.0E-9 | 14 | 25 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 5.7E-12 | 14 | 62 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 6.51E-16 | 14 | 45 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 3.4E-28 | 14 | 70 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.0E-9 | 36 | 52 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 231 aa Download sequence Send to blast |
MKGKGGPENQ RCPFRGVRQR TWGKWVAEIR EPNRGARLWL GTFNSALDAA RAYDAAARAL 60 YGDCARLNLS AASSPSRPGL QQLRPPHIST AAAAGAAAHD LHLHLQDKPS PPCCSADGAN 120 SNSSVTTGSP TEDNSVHTET VPMNAMQMAM DQEAEEDFEA YVTRLPRAED FGLEGFQEVP 180 LEVLDEAGGG ISIWDLTICP DMMPASTTPP PKHQPDVEVV DNAGLQRLAW * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 2e-13 | 14 | 69 | 6 | 62 | ATERF1 |
3gcc_A | 2e-13 | 14 | 69 | 6 | 62 | ATERF1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcriptional activator that binds to the DNA sequence 5'-[AG]CCGAC-3' of the cis-acting dehydration-responsive element (DRE). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PH01001487G0410 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Not induced by high-salt and drought stresses. {ECO:0000269|PubMed:20049613}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK108143 | 6e-87 | AK108143.1 Oryza sativa Japonica Group cDNA clone:002-139-E11, full insert sequence. | |||
GenBank | AP004623 | 6e-87 | AP004623.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0705A05. | |||
GenBank | AP005411 | 6e-87 | AP005411.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, BAC clone:OSJNBa0044E16. | |||
GenBank | AP014964 | 6e-87 | AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence. | |||
GenBank | AY339375 | 6e-87 | AY339375.1 Oryza sativa (japonica cultivar-group) Ap22 mRNA, complete cds. | |||
GenBank | CP012616 | 6e-87 | CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006660398.2 | 4e-72 | PREDICTED: dehydration-responsive element-binding protein 2C-like | ||||
Swissprot | Q84ZA1 | 2e-72 | DRE2C_ORYSJ; Dehydration-responsive element-binding protein 2C | ||||
TrEMBL | A2YY93 | 6e-70 | A2YY93_ORYSI; Uncharacterized protein | ||||
STRING | OS08T0565200-01 | 1e-70 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5510 | 34 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G18450.1 | 5e-25 | ERF family protein |
Publications ? help Back to Top | |||
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