PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01001462G0020
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family CO-like
Protein Properties Length: 302aa    MW: 31472.5 Da    PI: 6.6954
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01001462G0020genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box21.16.6e-072057438
         zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg....Ht 38
                     r C+ ++   ++l+C  ++ +lC  C    H g    H 
  PH01001462G0020 20 RPCDSCGVDAARLYCSADGAFLCTGCDARAH-GagsrHA 57
                     68*****999******************999.4466675 PP
2zf-B_box23.11.5e-0759103341
         zf-B_box   3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41 
                       + C+ +e+ ++   C+ +   lC+ C   +H+       H++ p
  PH01001462G0020  59 VWLCEVCEHAPAAVTCRADAAALCAACDADIHSAnplarrHERLP 103
                      679*****************************6688888898877 PP
3CCT68.61.7e-23225268144
              CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                      Rea+l+RY+eKrk+R+F+K+irY+sRKa+Ae RpR+KGrF+k++
  PH01001462G0020 225 REARLMRYREKRKNRRFNKTIRYASRKAYAEMRPRIKGRFAKRS 268
                      9*****************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.211761IPR000315B-box-type zinc finger
SMARTSM003361.3E-51761IPR000315B-box-type zinc finger
CDDcd000212.21E-72061No hitNo description
PROSITE profilePS5011910.42457104IPR000315B-box-type zinc finger
PfamPF006437.0E-659104IPR000315B-box-type zinc finger
SMARTSM003364.6E-962104IPR000315B-box-type zinc finger
PfamPF062031.6E-17225267IPR010402CCT domain
PROSITE profilePS5101716.698225267IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MDAEDSKPVV GAGYWGLGAR PCDSCGVDAA RLYCSADGAF LCTGCDARAH GAGSRHARVW  60
LCEVCEHAPA AVTCRADAAA LCAACDADIH SANPLARRHE RLPVAPFFGA LADAPQPFPS  120
PAFAAAAATV TGPQGSAAAD AFFAESDAYL GLDLDFARSM DGIKAVGVPA VPPELDLAAG  180
NLFYTEHSMN HSVSSSEVAV VPDALSAGAA PAPSLAVVAS KGKEREARLM RYREKRKNRR  240
FNKTIRYASR KAYAEMRPRI KGRFAKRSAE DDALLEHDGA CSPAVSALVA SDGDYGVVPS  300
F*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01001462G0020
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0951310.0FP095131.1 Phyllostachys edulis cDNA clone: bphylf034p18, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020194140.11e-143zinc finger protein CONSTANS-LIKE 3-like
SwissprotQ9SK537e-68COL3_ARATH; Zinc finger protein CONSTANS-LIKE 3
TrEMBLA0A3Q8AVT11e-167A0A3Q8AVT1_9POAL; Constans-like protein
STRINGEMT222811e-142(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP21913272
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24790.16e-41CONSTANS-like 3
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Tripathi P,Carvallo M,Hamilton EE,Preuss S,Kay SA
    Arabidopsis B-BOX32 interacts with CONSTANS-LIKE3 to regulate flowering.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(1): p. 172-177
    [PMID:27999181]