PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01001461G0130
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family bHLH
Protein Properties Length: 263aa    MW: 28200.9 Da    PI: 8.7368
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01001461G0130genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.54.2e-1277123354
                      HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      ++h+e+ErrRR+riN  +++Lr+++P         ++Ka+ L ++++++k+L
  PH01001461G0130  77 KSHSEAERRRRERINAHLATLRSMVPCT-----DNMDKAALLAEVINHVKKL 123
                      58*************************7.....58***************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.66E-1367126IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.1174123IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.0E-977123IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.3E-1378131IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.4E-1180129IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:3.30.70.2601.8E-4169234No hitNo description
SuperFamilySSF550212.98E-5169235No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MSSAAPFGDA AGLYEGFYGG FGGGHGGHGH GFSQLGASTS SVLLDGKTEK EPHATAMEMP  60
KRKGGGERDE KAAMALKSHS EAERRRRERI NAHLATLRSM VPCTDNMDKA ALLAEVINHV  120
KKLKNNAARI GKHCPVPSDT DEVTVEVQQE APHSTIGNNG GGRFLIRATL SCDDCTDLFV  180
DVKRAMQPLK LKVVGSEVTT LGGRVRLTFL MSCEGDVTVA SVHQALKSVL DKVNSAYDFA  240
PRESLLNKRR RVLTFEYSSS SS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18287ERRRRE
2247251KRRRV
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01001461G0130
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020189852.11e-96transcription factor bHLH30-like
TrEMBLA0A453EE193e-95A0A453EE19_AEGTS; Uncharacterized protein
STRINGPavir.Ea00157.1.p6e-91(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP110112938
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68810.13e-35bHLH family protein