PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01001458G0040
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family WRKY
Protein Properties Length: 407aa    MW: 44721 Da    PI: 6.8743
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01001458G0040genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY1048.2e-33100156259
                      --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                      dDgynWrKYGqK vkg e+prsYY+Ct+agCpvkkkversa d+++++i+Y+g+Hnh+
  PH01001458G0040 100 DDGYNWRKYGQKAVKGGEYPRSYYKCTHAGCPVKKKVERSA-DGQITQIIYRGQHNHQ 156
                      8****************************************.***************8 PP
2WRKY36.21.2e-11268290123
                      ---SS-EEEEEEE--TT-SS-EE CS
             WRKY   1 ldDgynWrKYGqKevkgsefprs 23 
                      ldDgy+WrKYGqK+vkg+++pr+
  PH01001458G0040 268 LDDGYRWRKYGQKVVKGNPHPRG 290
                      59*******************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.806.1E-3092158IPR003657WRKY domain
PROSITE profilePS5081125.21294158IPR003657WRKY domain
SuperFamilySSF1182902.88E-2697158IPR003657WRKY domain
SMARTSM007741.8E-3599157IPR003657WRKY domain
PfamPF031062.0E-25100156IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.6E-13255290IPR003657WRKY domain
SuperFamilySSF1182905.89E-10260290IPR003657WRKY domain
PROSITE profilePS5081115.985263290IPR003657WRKY domain
SMARTSM007742.7E-5268306IPR003657WRKY domain
PfamPF031061.2E-7269290IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 407 aa     Download sequence    Send to blast
MGNGIQLRGN FEMSHQQALA QVTAQAVHSQ YSMANQADYS LPFSSTTSAL TSQHVNSSAN  60
GTSTQEMPTL PSHMGNNNIK SNEVSQGFQT SALAVDKPAD DGYNWRKYGQ KAVKGGEYPR  120
SYYKCTHAGC PVKKKVERSA DGQITQIIYR GQHNHQRPPK RRSKDGGGLL NEADDFHENE  180
DASTRSEPGS QDHSGKFEAS NDGIAGLSMS RREEGGDQLS GSSDSEDEHD DEVRADNGDA  240
GGANANKRHV PAPAQRIIVQ TTSEVDLLDD GYRWRKYGQK VVKGNPHPRG AKHEASTVRM  300
VAVVSAIPDL EAKESSIVED DDEDLLYRVL VFDSMLVELY NLVPASRRLR SCHRSLRPDR  360
RRRTASLGST CPTWSSPELG RYSHVHESNI VFAHSKQQGI DRNGME*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-19991591475WRKY transcription factor 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1156161RPPKRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01001458G0040
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002467677.21e-168probable WRKY transcription factor 4
TrEMBLC5WVP71e-168C5WVP7_SORBI; Uncharacterized protein
STRINGSb01g032120.11e-168(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP134538122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13960.21e-54WRKY DNA-binding protein 4