PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PH01001430G0250 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
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Family | MYB | ||||||||
Protein Properties | Length: 263aa MW: 28784.5 Da PI: 7.7877 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 53.7 | 4.7e-17 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT+eEd++l+ v +G +W+++++ g+ R++k+c++rw +yl PH01001430G0250 14 RGPWTAEEDKKLISFVLTHGRCCWRAVPKLAGLLRCGKSCRLRWTNYL 61 89******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 57.9 | 2.3e-18 | 69 | 111 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 T++E++l+vd++++lG++ W++Ia++++ gRt++++k++w+++ PH01001430G0250 69 LLTADEEQLIVDLHAKLGNR-WSKIAAKLP-GRTDNEIKNHWNTH 111 569*****************.*********.************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.1E-22 | 5 | 63 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 14.87 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.75E-28 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.3E-13 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.7E-16 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 7.73E-11 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 28.423 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.4E-26 | 64 | 117 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.7E-16 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.7E-16 | 69 | 111 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.07E-13 | 71 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 263 aa Download sequence Send to blast |
MGRQPCCDKQ GVKRGPWTAE EDKKLISFVL THGRCCWRAV PKLAGLLRCG KSCRLRWTNY 60 LRPDLKRGLL TADEEQLIVD LHAKLGNRWS KIAAKLPGRT DNEIKNHWNT HIKKKLIKMG 120 IDPATRQPLA NTKEASPTGT TSRSTVTTES TKSSDTIGLL DSKGGCSGGI SMPTDSSEQS 180 SRNTGGHDQD PLVNWLLEAE LPIGEPWLNF ASSNDDELSS IAGPLPWDGT TDWLLDYQDF 240 GMGGDSSLIE SAMFHSSNGS KF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 9e-29 | 14 | 116 | 7 | 108 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | R2R3 MYB-type transcription factor controlling the production of volatile benzoides in flowers by regulating the shikimate pathway, namely by activation of the 5-enol-pyruvylshikimate-3-phosphate synthase gene. This scent, mostly produced in the evening and night by the petals, attracts the pollinators. Anthocyanins production is not controlled by ODO1 as color and scent are produced at different stages of development. {ECO:0000269|PubMed:15805488}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PH01001430G0250 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Increases before the onset of volatile emission at the end of the light period, peaks at night and decreases when volatile emission declines early morning. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK106039 | 1e-132 | AK106039.1 Oryza sativa Japonica Group cDNA clone:001-206-D11, full insert sequence. | |||
GenBank | AK111740 | 1e-132 | AK111740.1 Oryza sativa Japonica Group cDNA clone:J023047I22, full insert sequence. | |||
GenBank | AK121023 | 1e-132 | AK121023.1 Oryza sativa Japonica Group cDNA clone:J023049M10, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006659660.1 | 1e-147 | PREDICTED: protein ODORANT1-like | ||||
Swissprot | Q50EX6 | 6e-87 | ODO1_PETHY; Protein ODORANT1 | ||||
TrEMBL | J3MV17 | 1e-146 | J3MV17_ORYBR; Uncharacterized protein | ||||
STRING | OB08G29480.1 | 1e-147 | (Oryza brachyantha) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP79 | 38 | 563 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G22680.1 | 8e-82 | myb domain protein 85 |
Publications ? help Back to Top | |||
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