PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PH01001428G0090 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
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Family | NAC | ||||||||
Protein Properties | Length: 323aa MW: 35494.7 Da PI: 6.6728 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 161.8 | 2.6e-50 | 5 | 133 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 lppGfrF P+deelv++yL+kkv++++++ ++ evd++ ePw+Lp+ +k + +ewyfFs rd+kyatg+r+nratk+gyWkatgkd+ v++ PH01001428G0090 5 LPPGFRFYPSDEELVCFYLRKKVANERVTS-GTLVEVDLHAREPWELPEVAKLTADEWYFFSFRDRKYATGSRTNRATKTGYWKATGKDRVVHE 97 79*************************988.88***************87777889************************************99 PP NAM 95 k.kgelvglkktLvfykgrapkgektdWvmheyrle 129 + +++vg++ktLvf++grap+g+kt+Wvmhe+rle PH01001428G0090 98 TtVRAAVGMRKTLVFHRGRAPNGHKTSWVMHEFRLE 133 855677***************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.44E-58 | 3 | 151 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 57.856 | 5 | 151 | IPR003441 | NAC domain |
Pfam | PF02365 | 8.4E-28 | 6 | 132 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 323 aa Download sequence Send to blast |
MESRLPPGFR FYPSDEELVC FYLRKKVANE RVTSGTLVEV DLHAREPWEL PEVAKLTADE 60 WYFFSFRDRK YATGSRTNRA TKTGYWKATG KDRVVHETTV RAAVGMRKTL VFHRGRAPNG 120 HKTSWVMHEF RLETPNSPPK EDWVLCRVFN KQRKVSEAEQ GSNSNSNHAV GRGTAGPSSP 180 AALLGSSPDR TVVDKFDHHQ TAAAMGSSTP VLLVHGHGDH MISGHCSSSS SSSSSSALLN 240 LAMLQYSLLE YCPGPAMHDN MEVGASNTGC CAGSNSSNDA MMELELELGQ HVGFEEHGMG 300 EIIEMEMEPQ GGGSCYRDGL YF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 1e-49 | 5 | 152 | 17 | 166 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-49 | 5 | 152 | 17 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-49 | 5 | 152 | 17 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-49 | 5 | 152 | 17 | 166 | NO APICAL MERISTEM PROTEIN |
4dul_A | 1e-49 | 5 | 152 | 17 | 166 | NAC domain-containing protein 19 |
4dul_B | 1e-49 | 5 | 152 | 17 | 166 | NAC domain-containing protein 19 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PH01001428G0090 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015613250.1 | 1e-140 | protein CUP-SHAPED COTYLEDON 1 | ||||
TrEMBL | A0A0E0EYX0 | 1e-141 | A0A0E0EYX0_9ORYZ; Uncharacterized protein | ||||
STRING | OMERI10G09810.1 | 1e-142 | (Oryza meridionalis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP697 | 38 | 166 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G28530.1 | 3e-76 | NAC domain containing protein 74 |