PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01001428G0090
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family NAC
Protein Properties Length: 323aa    MW: 35494.7 Da    PI: 6.6728
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01001428G0090genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM161.82.6e-5051331129
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 
                      lppGfrF P+deelv++yL+kkv++++++   ++ evd++  ePw+Lp+ +k + +ewyfFs rd+kyatg+r+nratk+gyWkatgkd+ v++
  PH01001428G0090   5 LPPGFRFYPSDEELVCFYLRKKVANERVTS-GTLVEVDLHAREPWELPEVAKLTADEWYFFSFRDRKYATGSRTNRATKTGYWKATGKDRVVHE 97 
                      79*************************988.88***************87777889************************************99 PP

              NAM  95 k.kgelvglkktLvfykgrapkgektdWvmheyrle 129
                      +  +++vg++ktLvf++grap+g+kt+Wvmhe+rle
  PH01001428G0090  98 TtVRAAVGMRKTLVFHRGRAPNGHKTSWVMHEFRLE 133
                      855677***************************985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.44E-583151IPR003441NAC domain
PROSITE profilePS5100557.8565151IPR003441NAC domain
PfamPF023658.4E-286132IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MESRLPPGFR FYPSDEELVC FYLRKKVANE RVTSGTLVEV DLHAREPWEL PEVAKLTADE  60
WYFFSFRDRK YATGSRTNRA TKTGYWKATG KDRVVHETTV RAAVGMRKTL VFHRGRAPNG  120
HKTSWVMHEF RLETPNSPPK EDWVLCRVFN KQRKVSEAEQ GSNSNSNHAV GRGTAGPSSP  180
AALLGSSPDR TVVDKFDHHQ TAAAMGSSTP VLLVHGHGDH MISGHCSSSS SSSSSSALLN  240
LAMLQYSLLE YCPGPAMHDN MEVGASNTGC CAGSNSSNDA MMELELELGQ HVGFEEHGMG  300
EIIEMEMEPQ GGGSCYRDGL YF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-49515217166NO APICAL MERISTEM PROTEIN
1ut4_B1e-49515217166NO APICAL MERISTEM PROTEIN
1ut7_A1e-49515217166NO APICAL MERISTEM PROTEIN
1ut7_B1e-49515217166NO APICAL MERISTEM PROTEIN
4dul_A1e-49515217166NAC domain-containing protein 19
4dul_B1e-49515217166NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01001428G0090
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015613250.11e-140protein CUP-SHAPED COTYLEDON 1
TrEMBLA0A0E0EYX01e-141A0A0E0EYX0_9ORYZ; Uncharacterized protein
STRINGOMERI10G09810.11e-142(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP69738166
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28530.13e-76NAC domain containing protein 74