PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01001409G0360
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family HB-other
Protein Properties Length: 276aa    MW: 30846.1 Da    PI: 4.9583
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01001409G0360genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox16.11.9e-051553543
                     SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHH CS
         Homeobox  5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterq 43
                     t+ ++ q++ Le+++ + +yp+ e  +e A+++gL  +q
  PH01001409G0360 15 TKKSPLQIQMLERFYSEVQYPKPENLAEYATSVGLAYSQ 53
                     566899***************************998765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.0E-4953IPR009057Homeodomain-like
CDDcd000860.002461553No hitNo description
PROSITE profilePS5030318.427157275IPR033133Pumilio homology domain
PfamPF008065.2E-4187214IPR001313Pumilio RNA-binding repeat
SuperFamilySSF483711.04E-17188272IPR016024Armadillo-type fold
Gene3DG3DSA:1.25.10.104.6E-23189272IPR011989Armadillo-like helical
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0003723Molecular FunctionRNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    Send to blast
MVSTGLEAKR ENAGTKKSPL QIQMLERFYS EVQYPKPENL AEYATSVGLA YSQPEDDSYV  60
DKVARVQPDK NKLGELGFRY KYGVEEILDG DVECAVAPGA AEIPTGAVAC AAVAAAEVVR  120
HVQPSEDMRH VQPTEDSERR RARVIDYALG SLSFWREVSH WQCDALIHGH AQVREILVVP  180
LAPGIQIWVF SVEQYGSRFI QQKLETASTE EKDMVSAEIM PQALTLMTDV FRNYVVQKHG  240
SAAQVKEFDD QLIGRVLALS LQMYDCRVIQ KVWII*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3h3d_X1e-2019027131115Maternal protein pumilio
3h3d_Y1e-2019027131115Maternal protein pumilio
5kl1_A1e-2018627126114Maternal protein pumilio
5kl8_A1e-2018627126114Maternal protein pumilio
5kla_A1e-2018627126114Maternal protein pumilio
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01001409G0360
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0677394e-76AK067739.1 Oryza sativa Japonica Group cDNA clone:J013120L17, full insert sequence.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP45563350