PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01001390G0400
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family B3
Protein Properties Length: 268aa    MW: 29971.4 Da    PI: 8.2391
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01001390G0400genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B397.87e-3136140199
                      EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS..S CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr..s 88 
                      f+k ltpsdv+k++rlv+pk++ae++    g + e++  l++ede g+ W+++++y+ +s++yvltkGW+++vk+++L++gD+v F++++   +
  PH01001390G0400  36 FEKSLTPSDVGKLNRLVIPKQHAERYfplsGDSDEKGLLLSFEDEAGKPWRFRYSYWTSSQSYVLTKGWSRYVKEKHLDAGDVVHFERVRGlgT 129
                      99****************************77778999*************************************************8854467 PP

                      EE..EEEEE-S CS
               B3  89 efelvvkvfrk 99 
                      + +l+++++r+
  PH01001390G0400 130 GDRLFIGWRRR 140
                      88899999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.106.6E-4131144IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.54E-2933127IPR015300DNA-binding pseudobarrel domain
CDDcd100173.63E-2835126No hitNo description
PROSITE profilePS5086313.84636140IPR003340B3 DNA binding domain
PfamPF023621.2E-2836140IPR003340B3 DNA binding domain
SMARTSM010194.8E-2436141IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0080113Biological Processregulation of seed growth
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    Send to blast
MAMHPLSQGH PQAWPWGAAM YTNLHYHHHY EREHLFEKSL TPSDVGKLNR LVIPKQHAER  60
YFPLSGDSDE KGLLLSFEDE AGKPWRFRYS YWTSSQSYVL TKGWSRYVKE KHLDAGDVVH  120
FERVRGLGTG DRLFIGWRRR GESAPAAVAP PPAVRVSPPT LNSGEQQPWS PMCYSTSGSY  180
PTSPANSYAY RRSVDQDHSD ILHAGDSQAH TNSSSAASAP PSRRLRLFGV NLDCGPEPGA  240
EPTAMYGYMH QNPYAAVSTV PNYWLVL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A6e-54311403113B3 domain-containing transcription factor NGA1
5os9_B6e-54311403113B3 domain-containing transcription factor NGA1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01001390G0400
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020185469.11e-154B3 domain-containing protein Os11g0156000-like
SwissprotQ53QI01e-126Y1160_ORYSJ; B3 domain-containing protein Os11g0156000
TrEMBLA0A3B6LJ211e-160A0A3B6LJ21_WHEAT; Uncharacterized protein
STRINGTraes_5BL_B98E347A8.11e-160(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24463889
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36080.21e-54B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]