PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PH01001390G0020

Organism

Phyllostachys heterocycla

Taxonomic ID

38705

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys

Family

E2F/DP

Protein Properties

Length: 364aa MW: 39732.8 Da PI: 4.5831

Description

E2F/DP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PH01001390G0020	genome	ICBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	E2F_TDP	75.1	6.9e-24	112	171	7	71
E2F_TDP 7 rlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 +llt+kfl+ll+ ++ giv+ln++a++L +v ++RRiYDi+NVLe+++liekk kn+irwkg PH01001390G0020 112 GLLTKKFLNLLKGAPGGIVDLNNAAETL---EV--QKRRIYDITNVLEGIGLIEKKLKNNIRWKG 171 589***********************...99..**************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01372	5.3E-28	110	171	IPR003316	E2F/DP family, winged-helix DNA-binding domain
SuperFamily	SSF46785	7.89E-15	112	172	IPR011991	Winged helix-turn-helix DNA-binding domain
Pfam	PF02319	3.8E-21	112	171	IPR003316	E2F/DP family, winged-helix DNA-binding domain
Gene3D	G3DSA:1.10.10.10	3.0E-24	112	173	IPR011991	Winged helix-turn-helix DNA-binding domain
CDD	cd14660	7.76E-50	182	288	No hit	No description
SuperFamily	SSF144074	1.65E-33	183	288	No hit	No description
Pfam	PF16421	7.0E-34	187	286	IPR032198	E2F transcription factor, CC-MB domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005667	Cellular Component	transcription factor complex
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 364 aa Download sequence Send to blast
MAATGGGTSE GAARVLLQRY QPFAPPPGEY HQFGVSDGAG AGEMAEAGLK RKHDREDNEA 60 AESDDWMMSP GYAHAASSPV PTPLSGKGSK ISAKSKAAKG QKSCPQTPLC SGLLTKKFLN 120 LLKGAPGGIV DLNNAAETLE VQKRRIYDIT NVLEGIGLIE KKLKNNIRWK GVDDSRPGEV 180 SDDMSILQAD IEALTLQEHS FDEQISEMRD KLRELTEDEN NQKWLYVTED DIKSLPCFQN 240 QTLIAIKAPH GTTLEVPDPD EVNDYPQRRY RIVLRSTMGP IDVYLVSQFE EMNGMETPPR 300 PTQTVNMDSL ENPRTPLAAE SNKAAEMEPN IQEGLIMPPD APTSSQDIGG MMKIAPSELD 360 IKL*

Sequence ? help Back to Top

Protein Sequence Length: 364 aa Download sequence Send to blast

MAATGGGTSE GAARVLLQRY QPFAPPPGEY HQFGVSDGAG AGEMAEAGLK RKHDREDNEA  60
AESDDWMMSP GYAHAASSPV PTPLSGKGSK ISAKSKAAKG QKSCPQTPLC SGLLTKKFLN  120
LLKGAPGGIV DLNNAAETLE VQKRRIYDIT NVLEGIGLIE KKLKNNIRWK GVDDSRPGEV  180
SDDMSILQAD IEALTLQEHS FDEQISEMRD KLRELTEDEN NQKWLYVTED DIKSLPCFQN  240
QTLIAIKAPH GTTLEVPDPD EVNDYPQRRY RIVLRSTMGP IDVYLVSQFE EMNGMETPPR  300
PTQTVNMDSL ENPRTPLAAE SNKAAEMEPN IQEGLIMPPD APTSSQDIGG MMKIAPSELD  360
IKL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1cf7_A	2e-20	112	172	13	74	PROTEIN (TRANSCRIPTION FACTOR E2F-4)
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA cooperatively with DP proteins through the E2 recognition site, 5'-TTTC[CG]CGC-3' found in the promoter region of a number of genes whose products are involved in cell cycle regulation or in DNA replication. The binding of retinoblastoma-related proteins represses transactivation. Regulates gene expression both positively and negatively. Activates the expression of E2FB. Involved in the control of cell-cycle progression from G1 to S phase. Stimulates cell proliferation and delays differentiation. {ECO:0000269\|PubMed:11669580, ECO:0000269\|PubMed:11786543, ECO:0000269\|PubMed:11862494, ECO:0000269\|PubMed:11889041, ECO:0000269\|PubMed:11891240, ECO:0000269\|PubMed:12913157, ECO:0000269\|PubMed:15377755, ECO:0000269\|PubMed:16514015, ECO:0000269\|PubMed:19662336}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PH01001390G0020

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB041726	0.0	AB041726.1 Oryza sativa OsE2F2 mRNA for E2F homolog, partial cds.
GenBank	AK059233	0.0	AK059233.1 Oryza sativa Japonica Group cDNA clone:001-024-E10, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020177970.1	0.0	transcription factor E2FA-like
Swissprot	Q9FNY0	2e-95	E2FA_ARATH; Transcription factor E2FA
TrEMBL	A0A0E0MJV7	0.0	A0A0E0MJV7_ORYPU; Uncharacterized protein
STRING	OPUNC12G03430.1	0.0	(Oryza punctata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP625	37	148

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G36010.1	5e-91	E2F transcription factor 3

Publications ? help Back to Top
Magyar Z, et al. Arabidopsis E2FA stimulates proliferation and endocycle separately through RBR-bound and RBR-free complexes. EMBO J., 2012. 31(6): p. 1480-93 [PMID:22307083]