PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01001381G0480
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family ERF
Protein Properties Length: 175aa    MW: 19054.4 Da    PI: 10.1861
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01001381G0480genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP246.21.2e-142169355
              AP2  3 ykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                     ++GVr+++ +gr+ +eIr  +     r +r +lg+f+taeeAa+++ a + +l+g
  PH01001381G0480 21 FHGVRRRE-WGRYSVEIRNpW-----RrTREWLGTFDTAEEAARRYNAEAIRLHG 69
                     89***999.**********88.....55************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103218.612086IPR001471AP2/ERF domain
SuperFamilySSF541711.5E-142071IPR016177DNA-binding domain
CDDcd000187.64E-192085No hitNo description
SMARTSM003804.8E-162092IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.1E-192086IPR001471AP2/ERF domain
PRINTSPR003673.3E-82132IPR001471AP2/ERF domain
PfamPF008471.4E-72167IPR001471AP2/ERF domain
PRINTSPR003673.3E-84359IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 175 aa     Download sequence    Send to blast
MNSKAKARVK KVVGEGPWMH FHGVRRREWG RYSVEIRNPW RRTREWLGTF DTAEEAARRY  60
NAEAIRLHGD AEAIRLHGAR AITNFKKPVV VAVNAGDAQL PVPPSKNAPS GGASYDSSEE  120
SSHPAPSPTS VLQSFPPFAI SASEPTKKPP PQPVPPPPPP PAHPQEIAEA DGYF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01001381G0480
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015629650.14e-31ethylene-responsive transcription factor CRF2
TrEMBLA0A0D9Y5E91e-30A0A0D9Y5E9_9ORYZ; Uncharacterized protein
STRINGPavir.Eb00092.1.p1e-32(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP16903697
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28360.16e-16ERF domain protein 12