PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01001360G0530
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family ERF
Protein Properties Length: 269aa    MW: 29221.9 Da    PI: 6.3043
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01001360G0530genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.72e-2094143255
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                       y+GVr+++ +g+WvAeIr p++   r+r +lg+f+taeeAa a++ a+ +l+g
  PH01001360G0530  94 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDTAEEAALAYDSAAFRLRG 143
                      59******9.**********955...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000187.54E-3593153No hitNo description
PROSITE profilePS5103223.60494151IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.2E-3394152IPR001471AP2/ERF domain
SMARTSM003801.8E-3894157IPR001471AP2/ERF domain
SuperFamilySSF541715.69E-2394152IPR016177DNA-binding domain
PfamPF008471.2E-1495143IPR001471AP2/ERF domain
PRINTSPR003672.2E-1195106IPR001471AP2/ERF domain
PRINTSPR003672.2E-11117133IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MTTTIDWHGC NTNLPAALYG MLDSKQVMQA LTPPMVQDAP TISFSYPCSG VKQSAGLLLG  60
ANYQLTPAQI IEIQSKLHHM RRPSALPARP AAKLYRGVRQ RHWGKWVAEI RLPRNRTRLW  120
LGTFDTAEEA ALAYDSAAFR LRGDSARLNF PELRRGGAHL GPPLHAAVDA KLHAICHGMD  180
LPQQSQSTTT AVTPSSFSSE SPDVKSEPGC SGSESSSSAD GDVSSTGSSD VIPEMQLLDF  240
SEAPWDESES FLLRKYPSLE IDWDAILS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-2193151160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A2e-2192151363ATERF1
3gcc_A2e-2192151363ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01001360G0530
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2191851e-170AC219185.1 Oryza officinalis clone OO__Ba0118D01, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025795666.11e-137ethylene-responsive transcription factor RAP2-13-like
SwissprotO656656e-61ERF60_ARATH; Ethylene-responsive transcription factor ERF060
SwissprotQ8H1E43e-60RAP24_ARATH; Ethylene-responsive transcription factor RAP2-4
TrEMBLA0A2S3ITE41e-135A0A2S3ITE4_9POAL; Uncharacterized protein
STRINGGRMZM2G113060_P011e-133(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38235203
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39780.17e-49ERF family protein
Publications ? help Back to Top
  1. Pati A,Vasquez-Robinet C,Heath LS,Grene R,Murali TM
    XcisClique: analysis of regulatory bicliques.
    BMC Bioinformatics, 2006. 7: p. 218
    [PMID:16630346]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Iwase A, et al.
    WIND1-based acquisition of regeneration competency in Arabidopsis and rapeseed.
    J. Plant Res., 2015. 128(3): p. 389-97
    [PMID:25810222]
  4. Ikeuchi M, et al.
    PRC2 represses dedifferentiation of mature somatic cells in Arabidopsis.
    Nat Plants, 2015. 1: p. 15089
    [PMID:27250255]
  5. Iwase A, et al.
    WIND1 Promotes Shoot Regeneration through Transcriptional Activation of ENHANCER OF SHOOT REGENERATION1 in Arabidopsis.
    Plant Cell, 2017. 29(1): p. 54-69
    [PMID:28011694]