PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PH01001360G0530 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
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Family | ERF | ||||||||
Protein Properties | Length: 269aa MW: 29221.9 Da PI: 6.3043 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 64.7 | 2e-20 | 94 | 143 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr+++ +g+WvAeIr p++ r+r +lg+f+taeeAa a++ a+ +l+g PH01001360G0530 94 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDTAEEAALAYDSAAFRLRG 143 59******9.**********955...5*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 7.54E-35 | 93 | 153 | No hit | No description |
PROSITE profile | PS51032 | 23.604 | 94 | 151 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 5.2E-33 | 94 | 152 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.8E-38 | 94 | 157 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 5.69E-23 | 94 | 152 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 1.2E-14 | 95 | 143 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.2E-11 | 95 | 106 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.2E-11 | 117 | 133 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 269 aa Download sequence Send to blast |
MTTTIDWHGC NTNLPAALYG MLDSKQVMQA LTPPMVQDAP TISFSYPCSG VKQSAGLLLG 60 ANYQLTPAQI IEIQSKLHHM RRPSALPARP AAKLYRGVRQ RHWGKWVAEI RLPRNRTRLW 120 LGTFDTAEEA ALAYDSAAFR LRGDSARLNF PELRRGGAHL GPPLHAAVDA KLHAICHGMD 180 LPQQSQSTTT AVTPSSFSSE SPDVKSEPGC SGSESSSSAD GDVSSTGSSD VIPEMQLLDF 240 SEAPWDESES FLLRKYPSLE IDWDAILS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 2e-21 | 93 | 151 | 1 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
2gcc_A | 2e-21 | 92 | 151 | 3 | 63 | ATERF1 |
3gcc_A | 2e-21 | 92 | 151 | 3 | 63 | ATERF1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PH01001360G0530 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC219185 | 1e-170 | AC219185.1 Oryza officinalis clone OO__Ba0118D01, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025795666.1 | 1e-137 | ethylene-responsive transcription factor RAP2-13-like | ||||
Swissprot | O65665 | 6e-61 | ERF60_ARATH; Ethylene-responsive transcription factor ERF060 | ||||
Swissprot | Q8H1E4 | 3e-60 | RAP24_ARATH; Ethylene-responsive transcription factor RAP2-4 | ||||
TrEMBL | A0A2S3ITE4 | 1e-135 | A0A2S3ITE4_9POAL; Uncharacterized protein | ||||
STRING | GRMZM2G113060_P01 | 1e-133 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP382 | 35 | 203 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G39780.1 | 7e-49 | ERF family protein |
Publications ? help Back to Top | |||
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